Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 4.0e-114 414.8 220 100.0
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 3.9e-69 265.4 220 65.9
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 2.6e-49 199.5 119 77.3
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 1.6e-46 190.3 180 56.1
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 5.2e-45 185.3 219 49.3
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 5.7e-44 181.8 184 51.6
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 9.7e-44 181.0 124 66.9
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 8.2e-43 177.9 217 49.8
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.4e-42 177.2 175 53.7
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 1.0e-40 171.0 149 58.4
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 3.8e-40 169.1 161 54.7
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 5.0e-40 168.7 127 63.8
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 6.5e-40 168.3 223 46.6
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 6.5e-40 168.3 127 63.0
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 3.2e-39 166.0 158 53.8
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 4.2e-39 165.6 137 58.4
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 7.2e-39 164.9 120 61.7
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 9.4e-39 164.5 154 55.2
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.6e-38 163.7 123 64.2
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 1.6e-38 163.7 170 51.8
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.0e-37 161.0 178 47.2
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.0e-37 161.0 178 47.2
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 2.3e-37 159.8 151 55.6
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 8.8e-37 157.9 192 47.9
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 2.0e-36 156.8 126 60.3
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.6e-36 156.4 126 56.3
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 4.4e-36 155.6 163 52.8
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 4.4e-36 155.6 174 51.7
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.4e-36 155.6 113 63.7
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.4e-36 155.6 113 63.7
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 5.7e-36 155.2 217 47.0
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 7.5e-36 154.8 140 57.9
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 7.5e-36 154.8 157 50.3
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 1.3e-35 154.1 172 51.7
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 1.3e-35 154.1 144 56.2
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.3e-35 154.1 130 58.5
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.2e-35 153.3 201 46.3
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.1e-34 151.0 113 62.8
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.2e-33 147.5 177 49.2
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 1.6e-33 147.1 190 47.9
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 4.5e-33 145.6 184 44.6
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 4.5e-33 145.6 165 50.3
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 1.3e-32 144.1 115 59.1
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 2.2e-32 143.3 272 39.7
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 2.9e-32 142.9 124 56.5
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 6.5e-32 141.7 98 65.3
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 1.1e-31 141.0 184 45.7
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 1.1e-31 141.0 143 53.1
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 1.5e-31 140.6 115 54.8
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 1.9e-31 140.2 201 42.8
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 1.9e-31 140.2 195 41.5
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 4.2e-31 139.0 199 42.7
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 4.2e-31 139.0 148 53.4
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.2e-30 137.5 154 48.7
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.6e-30 137.1 91 70.3
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 2.8e-30 136.3 127 55.1
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 2.8e-30 136.3 127 55.1
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 3.6e-30 136.0 114 56.1
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 3.6e-30 136.0 91 69.2
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.0e-29 134.4 136 51.5
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.0e-29 134.4 214 43.0
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.4e-29 134.0 109 64.2
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.4e-29 134.0 198 43.9
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 1.4e-29 134.0 174 47.1
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 2.3e-29 133.3 128 50.0
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 6.8e-29 131.7 111 55.9
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 8.8e-29 131.3 147 46.9
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 8.8e-29 131.3 147 46.9
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 8.8e-29 131.3 95 65.3
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.0e-28 130.2 96 64.6
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.0e-28 130.2 143 50.3
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 2.6e-28 129.8 118 55.1
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 2.6e-28 129.8 118 55.1
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 2.6e-28 129.8 104 59.6
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 5.7e-28 128.6 199 41.7
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 5.7e-28 128.6 176 43.8
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 5.7e-28 128.6 86 64.0
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 7.5e-28 128.3 192 40.6
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 9.8e-28 127.9 127 51.2
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 1.3e-27 127.5 190 43.2
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 2.2e-27 126.7 111 55.0
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 3.7e-27 125.9 181 44.8
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.4e-26 124.0 234 39.3
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 3.1e-26 122.9 100 59.0
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 3.1e-26 122.9 184 40.8
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 9.2e-26 121.3 227 38.8
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 1.6e-25 120.6 102 57.8
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.7e-25 119.8 144 48.6
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 4.5e-25 119.0 85 62.4
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 4.5e-25 119.0 89 62.9
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 5.9e-25 118.6 227 39.2
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 1.0e-24 117.9 79 69.6
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 1.7e-24 117.1 142 45.1
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.7e-24 117.1 91 60.4
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 2.9e-24 116.3 83 69.9
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 5.0e-24 115.5 176 42.6
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 1.9e-23 113.6 94 59.6
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.9e-23 113.6 94 59.6
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 3.3e-23 112.8 82 65.9
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 4.3e-23 112.5 157 43.9
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 7.3e-23 111.7 101 60.4
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 1.2e-22 110.9 89 58.4
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 2.1e-22 110.2 75 66.7
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 4.7e-22 109.0 184 37.5
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 1.4e-21 107.5 84 61.9
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 6.8e-21 105.1 152 44.1
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 2.0e-20 103.6 207 34.3
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 3.4e-20 102.8 175 41.1
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 7.5e-20 101.7 200 34.5
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.2e-19 100.1 70 68.6
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 4.1e-18 95.9 170 40.0
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 5.4e-18 95.5 64 62.5
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 5.4e-18 95.5 151 40.4
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 9.2e-18 94.7 76 63.2
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.2e-17 94.4 67 68.7
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.2e-17 94.4 78 60.3
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 2.0e-17 93.6 62 64.5
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 2.7e-17 93.2 90 55.6
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 3.5e-17 92.8 91 51.6
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 5.9e-17 92.0 166 35.5
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.3e-16 90.9 100 50.0
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 1.3e-16 90.9 100 50.0
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 1.7e-16 90.5 80 52.5
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 1.7e-16 90.5 177 38.4
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 5.0e-16 89.0 117 40.2
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 1.1e-15 87.8 69 59.4
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 7.3e-15 85.1 206 31.6
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 2.8e-14 83.2 156 34.6
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 3.6e-14 82.8 91 47.3
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 3.6e-14 82.8 63 69.8
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 6.2e-14 82.0 74 55.4
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 2.3e-13 80.1 74 52.7
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 5.2e-13 79.0 87 49.4
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 2.6e-12 76.6 60 61.7
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 2.6e-12 76.6 217 33.6
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 3.4e-12 76.3 50 76.0
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 4.4e-12 75.9 116 38.8
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 9.8e-12 74.7 74 48.6
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 9.8e-12 74.7 49 77.6
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 1.7e-11 73.9 65 61.5
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 3.7e-11 72.8 85 49.4
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 4.9e-11 72.4 49 75.5
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 4.9e-11 72.4 133 36.8
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 8.3e-11 71.6 45 75.6
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 8.3e-11 71.6 178 36.0
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.4e-10 70.9 47 72.3
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 1.4e-10 70.9 107 38.3
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 1.9e-10 70.5 184 32.6
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 1.9e-10 70.5 119 35.3
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 1.9e-10 70.5 76 51.3
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 2.4e-10 70.1 81 46.9
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 3.2e-10 69.7 43 76.7
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 3.2e-10 69.7 61 55.7
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 7.0e-10 68.6 177 34.5
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 9.2e-10 68.2 48 68.8
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 9.2e-10 68.2 42 73.8
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 1.2e-09 67.8 42 73.8
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 1.6e-09 67.4 83 43.4
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 1.6e-09 67.4 143 36.4
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 2.0e-09 67.0 80 38.8
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 4.6e-09 65.9 58 55.2
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 6.6e-08 62.0 37 78.4
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 6.6e-08 62.0 37 78.4
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 8.6e-08 61.6 95 34.7
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 1.1e-07 61.2 38 71.1
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 2.5e-07 60.1 185 32.4
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 4.3e-07 59.3 104 33.7
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 9.5e-07 58.2 52 51.9
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 6.2e-06 55.5 37 70.3
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 6.2e-06 55.5 50 44.0
Mapoly0073s0064 Marchantia polymorpha HOM05D002369 ORTHO05D002435 8.1e-06 55.1 107 33.6


User provided reference genes

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