Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 2.7e-53 211.8 114 100.0
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 1.0e-49 199.9 114 92.1
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 4.0e-49 198.0 114 91.2
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 1.2e-45 186.4 114 86.0
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 1.2e-45 186.4 113 86.7
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 3.9e-44 181.4 112 82.1
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 6.6e-44 180.6 112 82.1
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 6.6e-44 180.6 112 82.1
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 6.6e-44 180.6 112 82.1
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 8.6e-44 180.3 112 82.1
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.9e-43 179.1 112 81.2
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 2.5e-43 178.7 112 81.2
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 3.3e-43 178.3 112 83.0
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 4.3e-43 177.9 112 79.5
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 5.6e-43 177.6 112 80.4
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 1.6e-42 176.0 114 79.8
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 2.1e-42 175.6 112 81.2
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 3.6e-42 174.9 112 78.6
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 4.7e-42 174.5 112 79.5
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 6.2e-42 174.1 112 79.5
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 6.2e-42 174.1 112 79.5
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 8.1e-42 173.7 112 79.5
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 1.1e-41 173.3 110 80.0
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 2.3e-41 172.2 112 78.6
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 2.3e-41 172.2 112 79.5
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 2.3e-41 172.2 113 77.9
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 75.4
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 5.2e-41 171.0 112 79.5
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 5.2e-41 171.0 112 79.5
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 6.8e-41 170.6 112 76.8
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 8.9e-41 170.2 112 79.5
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 8.9e-41 170.2 112 79.5
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 8.9e-41 170.2 114 75.4
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 1.2e-40 169.9 112 75.9
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 1.2e-40 169.9 114 73.7
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 2.0e-40 169.1 114 75.4
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 2.0e-40 169.1 112 76.8
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 3.4e-40 168.3 111 78.4
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 3.4e-40 168.3 112 79.5
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 5.8e-40 167.5 112 75.9
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 5.8e-40 167.5 112 77.7
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 5.8e-40 167.5 112 77.7
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 1.3e-39 166.4 112 76.8
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 1.3e-39 166.4 112 77.7
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 73.7
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 1.3e-39 166.4 109 78.9
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 1.3e-39 166.4 112 75.0
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 1.3e-39 166.4 112 75.0
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 1.7e-39 166.0 112 73.2
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 1.7e-39 166.0 112 73.2
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 2.2e-39 165.6 112 73.2
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 2.2e-39 165.6 114 75.4
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 2.2e-39 165.6 114 74.6
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 2.2e-39 165.6 112 74.1
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 2.9e-39 165.2 112 74.1
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 3.7e-39 164.9 112 74.1
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 4.9e-39 164.5 113 76.1
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 6.4e-39 164.1 113 75.2
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.4e-39 164.1 112 76.8
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 6.4e-39 164.1 112 72.3
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 1.1e-38 163.3 113 73.5
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 1.1e-38 163.3 112 76.8
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 1.4e-38 162.9 105 78.1
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.4e-38 162.9 112 73.2
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 1.4e-38 162.9 112 75.0
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.9e-38 162.5 112 76.8
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 1.9e-38 162.5 111 73.9
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 1.9e-38 162.5 113 75.2
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 2.4e-38 162.2 113 73.5
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 2.4e-38 162.2 113 73.5
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.4e-38 162.2 113 73.5
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.4e-38 162.2 113 73.5
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 2.4e-38 162.2 112 75.0
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 3.2e-38 161.8 140 64.3
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 4.1e-38 161.4 114 73.7
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 4.1e-38 161.4 112 72.3
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 4.1e-38 161.4 112 74.1
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 4.1e-38 161.4 113 74.3
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 5.4e-38 161.0 110 71.8
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 5.4e-38 161.0 111 74.8
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 7.1e-38 160.6 112 73.2
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.2e-37 159.8 112 71.4
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.2e-37 159.8 112 71.4
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 1.6e-37 159.5 112 71.4
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 2.1e-37 159.1 113 72.6
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 2.1e-37 159.1 111 72.1
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 2.7e-37 158.7 112 72.3
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 2.7e-37 158.7 112 72.3
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 3.5e-37 158.3 108 73.1
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 4.6e-37 157.9 111 72.1
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 6.0e-37 157.5 112 73.2
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 6.0e-37 157.5 112 72.3
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.7e-36 156.0 112 73.2
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 2.3e-36 155.6 112 71.4
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 3.0e-36 155.2 111 70.3
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 3.9e-36 154.8 112 71.4
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 3.9e-36 154.8 112 71.4
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 3.9e-36 154.8 112 71.4
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 5.1e-36 154.5 112 71.4
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 8.6e-36 153.7 112 71.4
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 8.6e-36 153.7 112 70.5
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 1.1e-35 153.3 113 71.7
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 2.5e-35 152.1 104 76.9
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 4.3e-35 151.4 112 71.4
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.6e-34 149.4 112 68.8
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 1.6e-34 149.4 113 69.9
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.6e-34 149.4 143 58.7
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 4.7e-34 147.9 112 68.8
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.8e-33 146.0 144 57.6
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 4.0e-33 144.8 114 67.5
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 1.2e-32 143.3 84 86.9
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 2.6e-32 142.1 80 91.2
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 1.7e-31 139.4 80 87.5
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 2.2e-31 139.0 77 90.9
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 6.4e-31 137.5 114 64.9
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.1e-30 136.7 92 77.2
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.9e-30 136.0 77 88.3
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 4.1e-30 134.8 108 65.7
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 1.2e-29 133.3 77 88.3
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.6e-29 132.9 91 73.6
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 1.3e-28 129.8 98 69.4
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 1.3e-28 129.8 83 80.7
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 1.3e-28 129.8 83 80.7
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 3.0e-28 128.6 114 59.6
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 1.1e-27 126.7 77 84.4
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.2e-24 116.7 106 61.3
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 2.0e-24 115.9 65 89.2
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.3e-23 113.2 72 79.2
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 2.9e-23 112.1 77 72.7
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 4.2e-22 108.2 72 73.6
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 5.4e-22 107.8 106 52.8
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 1.0e-20 103.6 103 57.3
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 6.6e-20 100.9 112 52.7
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 1.9e-19 99.4 75 66.7
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 9.6e-19 97.1 102 52.0
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 9.6e-19 97.1 75 65.3
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.4e-17 92.4 106 45.3
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 5.3e-17 91.3 100 55.0
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 1.7e-15 86.3 95 54.7
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 6.4e-15 84.3 65 66.2
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.1e-14 83.6 61 65.6
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.4e-14 82.4 79 53.2
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 2.7e-13 79.0 50 80.0
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 3.5e-13 78.6 51 80.4
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 6.0e-13 77.8 106 43.4
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 7.9e-13 77.4 43 86.0
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.0e-12 77.0 45 86.7
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.3e-12 76.6 100 46.0
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 1.8e-12 76.3 106 43.4
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 2.3e-12 75.9 51 78.4
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 6.7e-12 74.3 43 81.4
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.1e-11 73.6 51 66.7
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.1e-11 73.6 56 66.1
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 3.3e-11 72.0 91 46.2
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 5.6e-11 71.2 43 79.1
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 6.2e-10 67.8 108 38.0
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 4.0e-09 65.1 92 48.9
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 6.9e-09 64.3 51 62.7
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 1.2e-08 63.5 58 56.9
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 3.4e-08 62.0 59 49.2
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 1.7e-07 59.7 97 43.3
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 1.9e-06 56.2 97 42.3


User provided reference genes

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