Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 0.0e+00 1357.4 687 100.0
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 0.0e+00 1144.8 688 83.9
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 0.0e+00 1119.0 688 81.0
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 4.7e-312 1074.7 646 82.7
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 4.2e-287 991.1 627 80.7
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 7.3e-223 777.7 669 60.7
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.8e-221 773.1 680 60.9
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 4.0e-221 771.9 676 61.2
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 2.0e-220 769.6 669 61.0
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 2.0e-220 769.6 668 60.8
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 4.5e-220 768.5 673 60.2
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 9.9e-220 767.3 662 61.5
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.9e-218 763.1 662 61.9
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 3.0e-216 755.7 648 61.6
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 8.1e-214 747.7 682 58.9
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 6.9e-213 744.6 676 60.1
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.5e-212 741.9 676 59.9
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 1.3e-211 740.3 682 59.1
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 5.5e-210 734.9 700 57.9
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 1.2e-209 733.8 663 58.1
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 6.0e-209 731.5 771 53.6
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 1.8e-208 729.9 671 58.1
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 2.8e-206 722.6 693 57.7
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 1.2e-204 717.2 681 57.1
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 1.0e-203 714.1 681 57.4
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 1.3e-203 713.8 669 56.8
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 1.7e-203 713.4 735 54.8
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 2.2e-203 713.0 672 56.7
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 2.2e-203 713.0 660 58.5
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 2.1e-201 706.4 697 55.2
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 1.0e-200 704.1 680 55.9
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 1.9e-199 699.9 671 55.0
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 2.5e-199 699.5 643 59.7
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 3.3e-199 699.1 655 56.3
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 9.7e-199 697.6 666 57.4
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 9.7e-199 697.6 656 56.4
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.3e-198 697.2 689 55.0
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 4.8e-198 695.3 672 56.2
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 6.3e-198 694.9 619 58.8
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 8.2e-198 694.5 696 55.0
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 1.1e-197 694.1 691 54.4
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 1.1e-197 694.1 657 54.9
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 1.4e-197 693.7 663 55.5
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 4.1e-197 692.2 652 55.2
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 9.0e-197 691.0 708 54.4
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.5e-196 690.3 723 53.9
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.0e-196 689.9 715 54.1
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 5.9e-196 688.3 622 58.7
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 5.9e-196 688.3 653 57.6
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 5.9e-196 688.3 668 55.7
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 5.9e-196 688.3 684 56.3
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.3e-195 687.2 653 57.4
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 1.7e-195 686.8 671 55.6
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 3.8e-195 685.6 690 54.6
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 6.5e-195 684.9 708 54.0
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 1.1e-194 684.1 690 54.5
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 1.9e-194 683.3 618 59.9
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.2e-194 682.2 650 57.2
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 5.5e-194 681.8 654 57.0
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 7.2e-194 681.4 725 53.5
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 9.4e-194 681.0 655 55.9
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 1.2e-193 680.6 683 53.6
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 7.9e-193 677.9 675 53.5
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 7.9e-193 677.9 676 53.6
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 7.9e-193 677.9 666 53.9
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 1.4e-192 677.2 683 53.3
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 1.8e-192 676.8 691 54.0
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 2.3e-192 676.4 675 53.5
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 2.3e-192 676.4 683 53.3
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 5.1e-192 675.2 684 53.7
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 1.5e-191 673.7 661 53.1
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 1.3e-190 670.6 675 54.7
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 2.8e-190 669.5 680 52.4
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 2.8e-190 669.5 656 55.2
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 1.4e-189 667.2 663 53.4
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 5.3e-189 665.2 644 54.0
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 5.3e-189 665.2 639 54.5
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 2.0e-188 663.3 684 53.9
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 2.6e-188 662.9 738 52.2
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 2.6e-188 662.9 665 54.4
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.5e-188 662.1 653 56.4
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 4.5e-188 662.1 676 54.1
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 5.9e-188 661.8 649 54.2
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 7.7e-188 661.4 679 52.7
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 4.2e-186 655.6 715 50.9
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 4.7e-185 652.1 608 57.7
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 1.4e-184 650.6 691 52.7
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 1.8e-184 650.2 680 52.5
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 3.0e-184 649.4 648 55.1
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 8.8e-184 647.9 634 53.9
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 1.1e-183 647.5 646 53.7
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 2.0e-183 646.7 702 52.1
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 4.8e-182 642.1 666 53.5
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 1.4e-181 640.6 687 51.8
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.8e-181 640.2 672 53.1
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 3.1e-181 639.4 640 55.5
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 1.2e-180 637.5 562 60.9
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 1.3e-179 634.0 660 53.8
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 3.8e-179 632.5 654 52.0
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 4.2e-178 629.0 643 52.9
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 3.6e-177 625.9 632 53.0
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 4.7e-177 625.5 618 55.5
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 8.0e-177 624.8 580 59.3
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.8e-176 623.6 641 54.8
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 5.7e-175 618.6 629 54.8
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 1.3e-174 617.5 672 51.0
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 3.7e-174 615.9 673 50.8
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 8.2e-174 614.8 672 50.7
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 1.1e-173 614.4 672 50.7
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.2e-172 610.9 662 51.7
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 5.9e-172 608.6 671 50.8
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 5.9e-172 608.6 715 50.1
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.2e-171 606.7 665 51.1
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 1.5e-170 604.0 650 50.3
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 1.5e-170 604.0 636 52.8
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.9e-170 603.6 634 53.3
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 1.2e-169 600.9 679 49.9
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 2.6e-167 593.2 657 50.4
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 7.5e-167 591.7 629 51.4
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 2.7e-164 583.2 587 55.4
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 7.7e-164 581.6 673 49.5
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 1.5e-162 577.4 699 46.9
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 1.6e-161 573.9 682 48.1
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 2.1e-161 573.5 677 47.3
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 1.4e-160 570.9 660 50.0
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 2.0e-159 567.0 648 50.0
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 2.5e-154 550.1 673 46.7
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 1.7e-147 527.3 462 59.1
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 4.3e-146 522.7 490 55.9
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.6e-145 520.8 511 55.4
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 2.0e-140 503.8 688 44.0
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 1.5e-138 497.7 649 45.9
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 4.3e-138 496.1 493 55.6
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.4e-125 454.5 395 60.8
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 1.5e-122 444.5 485 50.5
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 4.3e-122 443.0 727 40.0
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 5.4e-117 426.0 668 41.0
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.3e-115 421.4 688 40.1
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 8.7e-115 418.7 378 60.1
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 1.5e-114 417.9 659 40.4
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 5.6e-114 416.0 645 40.9
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.3e-110 404.8 646 39.5
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 2.9e-110 403.7 652 39.7
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.6e-100 369.8 655 39.2
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 7.9e-100 369.0 745 35.4
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 1.3e-99 368.2 627 38.3
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 7.4e-98 362.5 648 39.7
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.3e-94 351.7 802 34.4
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 8.4e-94 349.0 596 38.3
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 3.7e-89 333.6 482 41.9
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 4.5e-87 326.6 397 46.1
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 1.7e-86 324.7 852 31.3
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 8.4e-86 322.4 520 41.5
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 2.5e-82 310.8 751 31.3
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.6e-79 300.8 513 39.4
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.4e-75 288.5 525 36.8
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 1.3e-73 282.0 254 59.1
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.7e-73 281.6 216 66.7
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 3.0e-67 260.8 210 61.9
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 1.0e-59 235.7 330 42.1
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 3.3e-29 134.4 108 63.0
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 3.6e-28 131.0 116 58.6
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 4.7e-28 130.6 235 36.2
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 7.5e-26 123.2 189 39.7
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 8.9e-19 99.8 112 50.0
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.2e-18 99.4 66 71.2
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 8.3e-17 93.2 70 64.3
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 1.1e-13 82.8 156 35.9
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 1.9e-13 82.0 161 36.0
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 1.5e-10 72.4 70 52.9
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.0e-10 72.0 97 43.3
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 9.9e-10 69.7 56 53.6
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 9.9e-10 69.7 52 63.5
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 2.3e-06 58.5 48 58.3


User provided reference genes

Program Settings