Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 0.0e+00 1387.5 833 100.0
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 1.8e-295 1019.2 866 72.2
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 5.9e-283 977.6 864 68.5
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 6.7e-162 575.5 814 45.7
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 7.4e-161 572.0 855 44.9
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 1.5e-158 564.3 459 73.9
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 3.0e-154 550.1 840 45.8
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 4.1e-151 539.7 862 49.9
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.8e-146 524.2 818 45.4
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 3.0e-146 523.5 896 43.0
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 1.1e-143 515.0 782 46.7
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 5.5e-140 502.7 775 45.0
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 9.4e-140 501.9 809 45.4
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 2.7e-139 500.4 809 45.2
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 1.0e-138 498.4 817 42.8
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 2.3e-138 497.3 809 45.0
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 8.8e-138 495.4 724 46.7
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 5.7e-137 492.7 838 42.8
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 3.8e-133 479.9 728 45.1
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 7.2e-132 475.7 724 43.8
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 6.1e-131 472.6 799 44.1
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 5.2e-130 469.5 796 47.0
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 6.8e-130 469.2 815 40.4
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 1.2e-129 468.4 699 42.3
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 3.4e-129 466.8 758 42.9
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 1.6e-126 458.0 761 45.7
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 5.9e-126 456.1 790 46.2
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 7.8e-126 455.7 768 43.1
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 7.8e-126 455.7 798 42.4
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 1.3e-125 454.9 858 42.2
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.7e-125 454.5 803 39.7
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.7e-125 454.5 771 38.7
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 1.9e-124 451.1 855 42.2
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 6.1e-123 446.0 789 39.5
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 1.4e-122 444.9 879 38.5
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 3.0e-122 443.7 841 39.5
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 5.8e-121 439.5 793 41.2
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 7.5e-121 439.1 868 39.1
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 4.9e-120 436.4 779 37.9
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 6.4e-120 436.0 789 40.7
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 8.3e-120 435.6 819 39.4
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 1.8e-119 434.5 669 44.2
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 4.1e-119 433.3 874 36.8
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 5.4e-119 433.0 867 37.3
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 7.0e-119 432.6 772 39.0
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 2.0e-118 431.0 798 41.9
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 6.0e-118 429.5 843 38.6
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 3.9e-117 426.8 813 39.6
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 8.6e-117 425.6 767 38.2
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 5.6e-116 422.9 822 39.8
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 9.5e-116 422.2 807 40.3
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 9.5e-116 422.2 855 38.9
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 1.6e-115 421.4 819 40.5
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 8.0e-115 419.1 272 78.3
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 3.1e-114 417.2 752 40.4
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 3.4e-113 413.7 726 37.2
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 7.5e-113 412.5 856 39.4
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 8.3e-112 409.1 793 38.8
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.1e-111 408.7 719 44.2
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 1.4e-111 408.3 850 36.4
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 7.8e-110 402.5 891 35.6
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 3.9e-109 400.2 722 37.5
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 4.3e-108 396.7 748 40.0
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 5.2e-106 389.8 739 36.1
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 5.2e-106 389.8 861 35.2
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 7.5e-105 386.0 850 33.1
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 2.9e-104 384.0 723 40.1
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 6.4e-104 382.9 893 35.3
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 1.9e-103 381.3 783 34.7
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 1.6e-102 378.3 739 39.6
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 3.5e-102 377.1 809 38.2
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 6.0e-102 376.3 741 36.3
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 6.0e-102 376.3 793 34.4
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 2.3e-101 374.4 750 38.4
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 3.0e-101 374.0 809 38.1
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 3.9e-101 373.6 808 37.9
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 5.1e-101 373.2 786 33.8
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 7.3e-100 369.4 733 37.2
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 8.1e-99 365.9 948 36.7
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 8.9e-98 362.5 795 35.7
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.4e-97 360.5 719 34.2
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 9.9e-97 359.0 765 36.9
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 4.1e-95 353.6 731 35.2
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 7.1e-95 352.8 737 33.6
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 2.1e-94 351.3 757 36.2
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 9.6e-92 342.4 735 33.9
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.2e-91 342.0 813 36.3
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.1e-90 337.4 645 35.3
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 2.6e-89 334.3 707 37.9
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 2.9e-88 330.9 739 34.2
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 4.9e-88 330.1 703 34.0
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 6.4e-88 329.7 895 30.9
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.4e-87 328.6 724 34.8
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 2.4e-87 327.8 870 39.4
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.2e-86 325.5 812 33.9
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 4.6e-86 323.6 769 33.6
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 6.0e-86 323.2 714 36.0
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 6.6e-85 319.7 778 35.3
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 2.5e-84 317.8 794 34.4
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 6.2e-83 313.2 805 31.8
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 6.9e-82 309.7 743 32.6
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 9.0e-82 309.3 895 29.8
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 1.5e-81 308.5 836 33.6
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 3.4e-81 307.4 886 30.4
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 6.4e-80 303.1 774 34.8
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 4.2e-79 300.4 752 35.8
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.6e-78 298.5 720 31.1
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 1.3e-77 295.4 815 30.6
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.3e-77 295.4 636 41.2
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 1.8e-74 285.0 823 35.1
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 2.4e-74 284.6 904 34.5
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 7.6e-73 279.6 721 38.7
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 1.2e-65 255.8 289 58.1
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 9.7e-60 236.1 714 27.5
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 9.7e-60 236.1 300 47.0
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 6.3e-59 233.4 736 29.1
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.5e-57 228.8 588 33.8
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.7e-51 208.8 273 45.1
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 3.7e-51 207.6 766 26.8
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 7.7e-49 199.9 172 52.9
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 4.7e-46 190.7 759 24.9
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 6.3e-43 180.3 223 47.1
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 2.2e-40 171.8 204 44.6
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.3e-37 161.8 170 48.2
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 5.2e-37 160.6 142 57.0
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 1.0e-32 146.4 145 53.8
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 1.5e-31 142.5 163 47.9
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 1.3e-24 119.4 272 31.6
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 9.4e-23 113.2 717 25.1
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 2.7e-22 111.7 299 31.1
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 4.0e-21 107.8 314 31.2
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 1.2e-20 106.3 230 36.5
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 2.0e-20 105.5 217 33.2
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 2.2e-19 102.1 198 34.8
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 1.7e-16 92.4 141 36.9
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 8.6e-16 90.1 189 34.9
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 1.5e-15 89.4 75 58.7
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 2.4e-10 72.0 61 57.4
FvH4_4g03480 Fragaria vesca HOM05D014995 ORTHO05D029569 1.6e-09 69.3 136 34.6
Sabra10G0125200 Salix brachista HOM05D000508 ORTHO05D000371 4.3e-07 61.2 92 40.2


User provided reference genes

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