Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 1.0e-45 186.4 98 100.0
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 6.7e-37 157.1 98 85.7
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.5e-36 155.2 98 81.6
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.7e-35 152.5 98 81.6
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 3.8e-32 141.4 100 79.0
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 1.1e-23 113.2 97 58.8
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.5e-23 112.8 97 62.9
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.5e-23 112.1 96 62.5
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 2.1e-22 109.0 95 62.1
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.7e-22 108.6 93 62.4
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 3.6e-22 108.2 100 60.0
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.8e-21 105.9 95 60.0
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 4.0e-21 104.8 80 67.5
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 5.2e-21 104.4 95 62.1
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.7e-21 104.0 95 58.9
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 8.8e-21 103.6 94 57.4
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.8e-21 103.6 82 67.1
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.1e-20 103.2 95 55.8
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 4.4e-20 101.3 80 66.2
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 4.4e-20 101.3 95 57.9
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 4.4e-20 101.3 82 65.9
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 4.4e-20 101.3 94 58.5
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.4e-20 100.5 80 63.8
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 9.7e-20 100.1 97 57.7
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.7e-19 99.4 96 61.5
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 8.2e-19 97.1 96 59.4
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-18 96.7 82 63.4
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.1e-18 96.7 94 59.6
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 1.1e-18 96.7 82 63.4
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.4e-18 96.3 97 57.7
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 2.4e-18 95.5 95 54.7
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 3.1e-18 95.1 96 57.3
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 5.3e-18 94.4 96 54.2
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 5.3e-18 94.4 92 55.4
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 5.3e-18 94.4 91 56.0
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 2.6e-17 92.0 97 51.5
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 5.9e-17 90.9 92 55.4
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 7.7e-17 90.5 92 55.4
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 7.7e-17 90.5 92 55.4
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 1.0e-16 90.1 90 55.6
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 1.0e-16 90.1 95 51.6
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.0e-16 90.1 100 55.0
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 2.2e-16 89.0 77 62.3
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 3.8e-16 88.2 97 49.5
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 5.0e-16 87.8 91 54.9
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 8.5e-16 87.0 93 53.8
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 7.2e-15 84.0 98 49.0
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 9.4e-15 83.6 94 50.0
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 2.7e-14 82.0 99 47.5
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 4.7e-14 81.3 83 57.8
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 8.0e-14 80.5 97 54.6
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 1.0e-13 80.1 103 48.5
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 1.8e-13 79.3 95 47.4
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 1.8e-13 79.3 99 47.5
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 5.2e-13 77.8 99 46.5
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 8.8e-13 77.0 74 60.8
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 1.5e-12 76.3 98 46.9
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 7.5e-12 73.9 92 46.7
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 1.3e-11 73.2 95 45.3
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.3e-11 73.2 77 54.5
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 2.2e-11 72.4 82 53.7
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 2.8e-11 72.0 94 48.9
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 2.8e-11 72.0 94 52.1
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 4.8e-11 71.2 95 45.3
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 6.3e-11 70.9 97 44.3
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 6.3e-11 70.9 76 53.9
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 8.3e-11 70.5 103 42.7
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 1.1e-10 70.1 66 57.6
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.4e-10 69.7 67 56.7
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 2.4e-10 68.9 67 55.2
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 7.0e-10 67.4 41 75.6
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 9.1e-10 67.0 106 44.3
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 1.2e-09 66.6 98 40.8
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 2.0e-09 65.9 89 41.6
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 5.9e-09 64.3 107 43.0
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 5.9e-09 64.3 72 48.6
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.9e-09 64.3 94 43.6
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 7.7e-09 63.9 94 43.6
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 7.7e-09 63.9 94 43.6
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 7.7e-09 63.9 94 43.6
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.7e-08 62.8 78 51.3
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.2e-08 62.4 93 43.0
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 2.9e-08 62.0 76 46.1
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 2.9e-08 62.0 86 45.3
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 6.5e-08 60.8 65 53.8
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 6.5e-08 60.8 78 46.2
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 8.5e-08 60.5 80 42.5
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 8.5e-08 60.5 94 41.5
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 8.5e-08 60.5 78 46.2
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.5e-07 59.7 78 48.7
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 1.5e-07 59.7 78 41.0
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 1.5e-07 59.7 92 43.5
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 1.9e-07 59.3 99 40.4
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 1.9e-07 59.3 94 40.4
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 1.9e-07 59.3 99 40.4
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 1.9e-07 59.3 99 40.4
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 1.9e-07 59.3 94 40.4
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.9e-07 59.3 94 41.5
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 2.5e-07 58.9 99 40.4
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 2.5e-07 58.9 97 40.2
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.5e-07 58.9 106 38.7
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 3.2e-07 58.5 77 46.8
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.2e-07 58.5 78 46.2
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 4.2e-07 58.2 107 36.4
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 4.2e-07 58.2 74 45.9
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 4.2e-07 58.2 75 45.3
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 7.2e-07 57.4 97 39.2
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 7.2e-07 57.4 97 39.2
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 7.2e-07 57.4 97 39.2
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 7.2e-07 57.4 105 40.0
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 7.2e-07 57.4 79 45.6
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 7.2e-07 57.4 78 42.3
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 7.2e-07 57.4 86 38.4
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 9.4e-07 57.0 85 43.5
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.2e-06 56.6 96 37.5
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.2e-06 56.6 48 54.2
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.2e-06 56.6 65 47.7
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 1.6e-06 56.2 88 42.0
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 1.6e-06 56.2 84 45.2
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.6e-06 56.2 100 44.0
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 2.1e-06 55.8 94 39.4
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 2.1e-06 55.8 88 40.9
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 2.1e-06 55.8 74 44.6
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 2.7e-06 55.5 94 42.6
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 2.7e-06 55.5 94 39.4
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 2.7e-06 55.5 94 39.4
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.7e-06 55.5 84 42.9
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 3.6e-06 55.1 94 39.4
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 3.6e-06 55.1 94 39.4
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 3.6e-06 55.1 94 39.4
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 3.6e-06 55.1 94 40.4
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.6e-06 55.1 96 38.5
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 4.7e-06 54.7 72 41.7
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 6.1e-06 54.3 97 39.2
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 6.1e-06 54.3 73 49.3
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 6.1e-06 54.3 99 37.4
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.0e-06 53.9 97 37.1
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 8.0e-06 53.9 92 43.5
Sed0002184 Sechium edule HOM05D003683 ORTHO05D004143 8.0e-06 53.9 68 45.6


User provided reference genes

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