Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 1.5e-287 992.3 544 100.0
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 7.5e-247 857.1 551 87.5
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 7.3e-234 813.9 609 74.1
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 5.1e-227 791.2 552 83.0
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 8.8e-179 630.9 471 76.4
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 7.4e-178 627.9 549 68.9
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 4.5e-175 618.6 464 77.2
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 1.3e-174 617.1 465 77.8
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.9e-174 615.9 484 69.8
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 4.2e-173 612.1 489 73.4
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 9.4e-173 610.9 457 77.7
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 1.2e-172 610.5 471 76.4
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 3.6e-172 609.0 465 77.4
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 5.2e-171 605.1 465 75.5
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 5.2e-171 605.1 457 77.0
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 3.3e-170 602.4 442 79.0
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 9.7e-170 600.9 515 69.3
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 1.1e-168 597.4 464 74.6
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 3.1e-168 595.9 465 74.2
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.0e-163 580.9 546 66.3
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 3.0e-163 579.3 466 72.5
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 6.8e-163 578.2 584 57.9
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 1.2e-162 577.4 476 72.9
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.6e-162 576.2 466 73.4
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 1.7e-161 573.5 461 73.3
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.7e-161 573.5 473 73.2
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.2e-161 573.2 477 72.7
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 2.4e-160 569.7 468 70.9
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 1.0e-158 564.3 457 73.7
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 1.3e-158 563.9 461 71.6
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 8.6e-158 561.2 431 75.9
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 1.5e-157 560.5 433 76.2
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 1.9e-157 560.1 404 79.2
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 3.3e-157 559.3 465 71.8
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 4.2e-157 558.9 499 69.1
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 9.5e-157 557.8 489 68.9
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 3.6e-156 555.8 467 72.4
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 1.0e-155 554.3 464 70.7
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 5.2e-155 552.0 468 69.9
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 3.4e-154 549.3 445 73.7
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 4.9e-153 545.4 472 71.0
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 3.1e-152 542.7 477 69.4
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 5.4e-152 542.0 444 74.3
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 5.4e-152 542.0 468 68.8
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 1.2e-151 540.8 510 64.9
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 2.0e-151 540.0 550 63.5
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 2.0e-151 540.0 526 64.3
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 3.5e-151 539.3 382 79.8
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 4.5e-151 538.9 473 67.9
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.3e-150 536.6 490 68.4
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.5e-149 533.9 459 70.6
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 1.9e-149 533.5 448 71.9
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 2.5e-149 533.1 527 63.8
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 4.3e-149 532.3 455 71.6
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 5.6e-149 531.9 457 70.7
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 7.3e-149 531.6 497 66.6
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 1.2e-148 530.8 433 73.4
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 1.6e-148 530.4 514 63.6
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 1.0e-147 527.7 403 76.4
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 5.2e-147 525.4 356 78.1
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 2.0e-146 523.5 541 61.9
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 2.0e-146 523.5 514 66.1
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.0e-146 523.5 466 70.0
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 4.4e-146 522.3 469 68.4
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 1.7e-145 520.4 557 60.7
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 8.3e-145 518.1 399 76.9
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 1.1e-144 517.7 545 60.6
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 1.4e-144 517.3 520 62.5
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 4.1e-144 515.8 554 56.3
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 5.4e-144 515.4 531 61.6
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.6e-143 513.8 448 69.2
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 2.0e-143 513.5 548 61.3
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.3e-142 510.0 457 68.3
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 3.9e-142 509.2 449 68.6
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.1e-141 507.7 489 64.2
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.9e-141 506.9 457 68.1
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 3.3e-141 506.1 549 61.2
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 5.6e-141 505.4 439 69.7
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 1.2e-140 504.2 548 59.3
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 3.6e-140 502.7 527 61.5
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 1.4e-139 500.7 523 61.6
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.8e-139 500.4 489 63.6
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 6.8e-139 498.4 526 61.4
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 1.5e-138 497.3 442 67.6
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 4.4e-138 495.7 452 66.4
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 8.3e-137 491.5 553 54.2
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 3.2e-136 489.6 549 59.0
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 4.1e-136 489.2 503 61.6
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 5.4e-136 488.8 463 65.2
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 5.4e-136 488.8 463 65.2
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 1.2e-135 487.6 450 66.0
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 2.1e-135 486.9 442 67.6
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 3.5e-135 486.1 442 66.7
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 4.6e-135 485.7 498 63.3
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 4.6e-135 485.7 468 64.5
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 6.0e-135 485.3 476 63.7
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 7.8e-135 485.0 582 57.7
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 1.3e-134 484.2 458 65.3
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.9e-133 480.3 458 64.8
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.5e-133 479.9 524 60.5
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 4.3e-133 479.2 490 61.6
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 2.8e-132 476.5 571 56.2
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 3.6e-132 476.1 412 72.3
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.7e-132 475.7 540 58.9
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.2e-132 475.3 512 60.7
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 2.0e-130 470.3 489 63.0
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 1.2e-127 461.1 467 64.5
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 7.3e-125 451.8 550 56.7
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 3.1e-123 446.4 478 62.6
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 2.2e-121 440.3 432 65.5
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.1e-117 427.9 461 59.4
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 3.3e-117 426.4 482 59.8
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 4.0e-115 419.5 410 65.9
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.2e-114 417.9 424 62.3
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 7.6e-114 415.2 483 58.8
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 8.4e-113 411.8 601 46.1
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 3.2e-112 409.8 358 71.2
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 4.3e-109 399.4 363 65.0
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 1.6e-103 380.9 531 48.6
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 1.8e-102 377.5 405 58.5
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 8.4e-97 358.6 282 64.2
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 8.4e-97 358.6 330 57.6
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 1.9e-93 347.4 441 51.2
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 9.6e-93 345.1 368 65.5
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 3.5e-87 326.6 345 62.0
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 3.1e-83 313.5 602 39.2
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.0e-78 298.5 520 43.3
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 4.3e-77 293.1 265 61.9
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 6.9e-75 285.8 293 66.6
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 8.5e-73 278.9 398 41.7
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 5.1e-70 269.6 515 39.2
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.7e-50 204.1 153 66.0
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 7.2e-48 196.1 138 70.3
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.8e-45 185.7 142 63.4
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.2e-44 184.5 142 62.7
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.9e-44 183.3 142 62.7
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 7.0e-43 179.5 183 55.2
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.6e-40 169.9 168 54.2
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.7e-39 166.8 135 60.7
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.1e-39 166.4 135 60.0
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 5.4e-35 153.3 461 28.4
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 2.0e-34 151.4 95 80.0
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.5e-34 150.6 171 48.5
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.0e-33 146.7 129 58.9
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.3e-25 122.1 73 75.3
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.7e-25 121.7 72 73.6
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 2.5e-24 117.9 68 85.3
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 2.0e-21 108.2 75 68.0
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 6.4e-20 103.2 377 26.3
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 2.7e-18 97.8 57 84.2
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 3.0e-17 94.4 122 48.4
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 4.7e-15 87.0 55 72.7
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.9e-11 75.1 95 51.6
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.2e-10 72.4 52 71.2
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 1.6e-10 72.0 57 63.2
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 7.8e-10 69.7 123 40.7


User provided reference genes

Program Settings