Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 0.0e+00 1325.1 674 100.0
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 0.0e+00 1160.2 674 85.8
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 0.0e+00 1153.7 679 85.3
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 8.5e-248 860.5 646 67.5
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 1.1e-247 860.1 680 64.9
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 1.5e-244 849.7 668 66.0
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 7.4e-244 847.4 649 65.6
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 3.7e-243 845.1 654 65.9
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 6.9e-242 840.9 684 62.6
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 4.5e-241 838.2 614 66.4
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 3.2e-239 832.0 648 65.4
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 5.5e-239 831.2 652 66.3
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 6.1e-238 827.8 649 64.7
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 5.1e-237 824.7 644 64.1
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 1.5e-236 823.2 514 83.7
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 2.0e-236 822.8 651 64.4
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 1.3e-235 820.1 649 64.4
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.4e-234 816.6 649 64.1
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 3.1e-234 815.5 644 64.3
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 4.7e-230 801.6 675 61.6
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 6.1e-230 801.2 670 61.5
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 1.4e-229 800.0 660 63.3
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 5.2e-229 798.1 653 63.1
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 5.2e-229 798.1 649 63.0
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 4.4e-228 795.0 678 59.4
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 9.7e-228 793.9 651 60.2
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 2.2e-227 792.7 669 62.3
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 4.8e-227 791.6 649 63.0
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 8.2e-227 790.8 647 63.2
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 4.1e-226 788.5 661 62.8
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 7.0e-226 787.7 677 60.7
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 9.1e-226 787.3 666 61.4
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 1.3e-224 783.5 650 62.9
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 2.2e-224 782.7 744 57.4
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 2.9e-224 782.3 647 62.6
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 3.8e-224 781.9 655 63.5
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 3.8e-224 781.9 681 60.8
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 6.5e-224 781.2 648 62.3
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 6.5e-224 781.2 649 61.5
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 8.5e-224 780.8 656 60.4
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 1.5e-223 780.0 644 62.1
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 1.0e-221 773.9 647 60.3
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 2.3e-221 772.7 699 55.4
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 2.3e-221 772.7 649 60.9
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 2.0e-220 769.6 647 59.8
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 2.6e-220 769.2 668 59.1
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 3.7e-219 765.4 679 58.9
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 1.8e-218 763.1 656 59.6
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 2.7e-217 759.2 667 59.2
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 3.5e-217 758.8 656 58.8
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 5.9e-217 758.1 644 61.6
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.3e-216 756.9 726 52.8
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 1.7e-216 756.5 656 58.4
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 5.0e-216 755.0 647 60.3
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 1.5e-215 753.4 685 57.7
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 2.1e-214 749.6 647 58.6
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 3.6e-214 748.8 668 56.9
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 8.8e-213 744.2 648 58.8
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 5.7e-212 741.5 652 59.0
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 9.8e-212 740.7 654 58.7
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 2.4e-210 736.1 655 60.2
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 2.0e-209 733.0 649 59.8
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 7.7e-209 731.1 690 57.4
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 3.8e-208 728.8 627 59.3
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 6.5e-208 728.0 678 55.6
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 8.9e-205 717.6 656 57.6
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 3.1e-202 709.1 680 54.1
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 3.1e-202 709.1 683 54.0
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 2.7e-201 706.1 683 53.9
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 1.7e-200 703.4 683 54.2
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 2.3e-200 703.0 674 54.7
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 5.6e-199 698.4 686 52.6
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 7.3e-199 698.0 686 54.4
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 6.1e-198 694.9 666 53.8
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 8.0e-198 694.5 686 54.1
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 1.2e-196 690.6 683 53.4
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 1.7e-195 686.8 684 53.4
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 2.9e-195 686.0 684 53.4
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 1.9e-194 683.3 658 55.9
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 1.7e-192 676.8 651 54.8
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 6.6e-192 674.9 657 57.4
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 8.6e-192 674.5 669 56.4
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 1.4e-189 667.2 656 55.9
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 6.4e-187 658.3 507 64.3
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 5.0e-184 648.7 540 64.1
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 1.9e-183 646.7 653 53.8
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 2.0e-180 636.7 651 52.7
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 8.4e-171 604.7 648 49.8
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 4.2e-170 602.4 645 50.7
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 5.1e-168 595.5 505 61.4
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 1.2e-166 590.9 458 64.2
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 2.9e-163 579.7 660 47.4
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 3.9e-152 542.7 520 55.6
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 3.7e-150 536.2 621 49.8
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 4.3e-135 486.1 644 44.1
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 6.1e-121 439.1 408 56.6
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 9.7e-119 431.8 645 39.8
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 3.3e-111 406.8 658 37.5
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 6.6e-91 339.3 399 50.6
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 3.3e-82 310.5 238 66.0
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 7.5e-71 272.7 464 38.1
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.6e-65 255.0 516 34.5
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 2.8e-65 254.2 498 35.1
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.3e-49 202.2 145 63.4
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 8.1e-49 199.5 179 54.7
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.1e-48 199.1 230 46.1
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 7.6e-39 166.4 231 39.8
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.4e-32 145.6 399 29.8
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 7.1e-29 133.3 92 66.3
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 3.5e-28 131.0 99 64.6
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 9.6e-26 122.9 156 44.9
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 1.0e-22 112.8 112 53.6
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 9.3e-21 106.3 87 62.1
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 3.0e-19 101.3 114 50.9
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 3.4e-15 87.8 94 52.1
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 1.3e-14 85.9 74 60.8
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 1.2e-12 79.3 96 47.9
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 5.1e-11 73.9 65 56.9
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 2.5e-10 71.6 65 58.5


User provided reference genes

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