Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 5.5e-37 157.1 80 100.0
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 1.7e-30 135.6 88 84.1
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 6.5e-30 133.7 90 81.1
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 9.4e-29 129.8 87 81.6
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 2.6e-18 95.1 95 57.9
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 1.1e-16 89.7 100 59.0
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 1.1e-16 89.7 88 59.1
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 2.4e-16 88.6 91 57.1
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 3.1e-16 88.2 105 49.5
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 7.0e-16 87.0 98 52.0
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 9.1e-16 86.7 94 53.2
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 9.1e-16 86.7 96 56.2
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 2.0e-15 85.5 104 51.0
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 2.6e-15 85.1 90 56.7
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 3.5e-15 84.7 93 57.0
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 5.9e-15 84.0 82 61.0
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 1.0e-14 83.2 104 50.0
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 1.0e-14 83.2 88 58.0
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.3e-14 82.8 98 52.0
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 2.9e-14 81.6 92 57.6
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 3.8e-14 81.3 93 53.8
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 3.8e-14 81.3 93 55.9
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 3.8e-14 81.3 106 48.1
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 6.5e-14 80.5 92 51.1
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 6.5e-14 80.5 101 52.5
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 6.5e-14 80.5 88 60.2
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 8.5e-14 80.1 93 53.8
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 8.5e-14 80.1 98 53.1
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 8.5e-14 80.1 81 54.3
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 8.5e-14 80.1 91 54.9
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 1.1e-13 79.7 95 55.8
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.5e-13 79.3 103 50.5
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 2.5e-13 78.6 94 52.1
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 2.5e-13 78.6 100 53.0
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 2.5e-13 78.6 100 53.0
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 9.4e-13 76.6 91 48.4
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.2e-12 76.3 98 48.0
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 2.1e-12 75.5 93 53.8
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 2.7e-12 75.1 90 50.0
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 3.6e-12 74.7 97 51.5
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 4.7e-12 74.3 96 47.9
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 4.7e-12 74.3 99 49.5
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 6.1e-12 73.9 98 52.0
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 6.1e-12 73.9 81 54.3
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 1.0e-11 73.2 96 47.9
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 1.0e-11 73.2 101 48.5
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.4e-11 72.8 95 49.5
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 1.4e-11 72.8 95 49.5
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 1.4e-11 72.8 86 53.5
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 2.3e-11 72.0 82 56.1
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 3.0e-11 71.6 95 48.4
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 4.0e-11 71.2 87 49.4
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 4.0e-11 71.2 97 48.5
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 4.0e-11 71.2 89 48.3
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 4.0e-11 71.2 93 46.2
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 5.2e-11 70.9 104 46.2
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 6.7e-11 70.5 95 48.4
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 8.8e-11 70.1 99 46.5
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 8.8e-11 70.1 89 50.6
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 1.1e-10 69.7 92 52.2
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 1.5e-10 69.3 92 44.6
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 2.6e-10 68.6 84 48.8
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 2.2e-09 65.5 99 42.4
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 2.8e-09 65.1 91 42.9
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 4.8e-09 64.3 87 47.1
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 2.4e-08 62.0 50 70.0
Os05g0456900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 2.4e-08 62.0 77 48.1
EL10Ac7g17001 Beta vulgaris HOM05D007574 ORTHO05D007552 7.0e-08 60.5 81 44.4
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 2.7e-07 58.5 47 66.0
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 2.7e-07 58.5 87 42.5
Ah.01g023650 Amaranthus hybridus HOM05D007574 ORTHO05D007552 3.5e-07 58.2 76 50.0
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 3.5e-07 58.2 48 66.7
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 3.5e-07 58.2 77 50.6
Aqoxy1G00836 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 5.9e-07 57.4 78 48.7
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 1.0e-06 56.6 79 50.6
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 1.7e-06 55.8 48 66.7
Lsat_1_v5_gn_6_117001 Lactuca sativa HOM05D007574 ORTHO05D007552 2.2e-06 55.5 74 45.9
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 2.2e-06 55.5 84 44.0
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 3.8e-06 54.7 83 47.0
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 5.0e-06 54.3 47 61.7
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 5.0e-06 54.3 90 41.1
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 6.5e-06 53.9 79 45.6
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 8.5e-06 53.5 81 44.4
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 8.5e-06 53.5 48 58.3


User provided reference genes

Program Settings