Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004563 Sechium edule HOM05D003313 ORTHO05D004217 7.8e-49 196.8 100 100.0
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 1.7e-24 115.9 84 72.6
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 1.7e-24 115.9 84 72.6
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 1.7e-24 115.9 84 72.6
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 2.3e-24 115.5 84 72.6
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 1.5e-20 102.8 84 64.3
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 1.7e-19 99.4 84 63.1
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 2.2e-19 99.0 84 61.9
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 2.2e-19 99.0 84 61.9
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 4.9e-19 97.8 84 60.7
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 4.9e-19 97.8 84 60.7
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 4.9e-19 97.8 84 60.7
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 4.9e-19 97.8 84 60.7
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 4.9e-19 97.8 84 60.7
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 4.9e-19 97.8 84 60.7
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 4.9e-19 97.8 84 60.7
Gohir.A08G016300 Gossypium hirsutum HOM05D003313 ORTHO05D004217 8.4e-19 97.1 84 60.7
Gohir.D08G026400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 8.4e-19 97.1 84 60.7
Gorai.004G022900 Gossypium raimondii HOM05D003313 ORTHO05D004217 8.4e-19 97.1 84 60.7
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 1.1e-18 96.7 84 59.5
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 1.1e-18 96.7 84 59.5
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 1.1e-18 96.7 84 59.5
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 1.4e-18 96.3 84 60.7
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 1.4e-18 96.3 84 60.7
vmacro01644 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 1.4e-18 96.3 84 60.7
Actinidia11708 Actinidia chinensis HOM05D003313 ORTHO05D004217 1.9e-18 95.9 84 59.5
COL.COLO4_07112 Corchorus olitorius HOM05D003313 ORTHO05D004217 1.9e-18 95.9 84 59.5
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 2.4e-18 95.5 84 59.5
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 2.4e-18 95.5 84 59.5
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 2.4e-18 95.5 84 59.5
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 3.2e-18 95.1 84 59.5
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 3.2e-18 95.1 84 59.5
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 3.2e-18 95.1 84 59.5
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 3.2e-18 95.1 84 59.5
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 3.2e-18 95.1 84 59.5
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 3.2e-18 95.1 84 59.5
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 3.2e-18 95.1 84 59.5
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 3.2e-18 95.1 84 58.3
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 3.2e-18 95.1 84 59.5
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 3.2e-18 95.1 84 60.7
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 3.2e-18 95.1 84 59.5
BcaC04g23548 Brassica carinata HOM05D003313 ORTHO05D004217 4.2e-18 94.7 84 58.3
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 4.2e-18 94.7 84 58.3
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 4.2e-18 94.7 84 58.3
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 4.2e-18 94.7 84 58.3
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 4.2e-18 94.7 84 57.1
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 4.2e-18 94.7 86 55.8
Actinidia17722 Actinidia chinensis HOM05D003313 ORTHO05D004217 5.4e-18 94.4 84 59.5
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 5.4e-18 94.4 84 58.3
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 5.4e-18 94.4 84 58.3
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 5.4e-18 94.4 84 59.5
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 5.4e-18 94.4 84 59.5
Haze_14998 Corylus avellana HOM05D003313 ORTHO05D004217 7.1e-18 94.0 84 58.3
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 9.3e-18 93.6 88 53.4
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 1.2e-17 93.2 84 57.1
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 1.2e-17 93.2 84 58.3
TWI39G0913 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 1.6e-17 92.8 84 58.3
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 2.7e-17 92.0 84 58.3
CiPaw.01G000400 Carya illinoinensis HOM05D003313 ORTHO05D004217 3.5e-17 91.7 84 58.3
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 3.5e-17 91.7 84 54.8
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 3.5e-17 91.7 84 58.3
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 3.5e-17 91.7 84 58.3
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 4.6e-17 91.3 84 56.0
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 4.6e-17 91.3 84 57.1
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 4.6e-17 91.3 84 57.1
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 4.6e-17 91.3 84 53.6
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 6.0e-17 90.9 84 56.0
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 6.0e-17 90.9 84 57.1
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 6.0e-17 90.9 84 57.1
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 6.0e-17 90.9 84 57.1
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 6.0e-17 90.9 86 53.5
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 7.9e-17 90.5 84 58.3
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 7.9e-17 90.5 84 53.6
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 7.9e-17 90.5 84 54.8
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 1.0e-16 90.1 84 52.4
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 1.0e-16 90.1 84 54.8
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 1.0e-16 90.1 84 57.1
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 1.0e-16 90.1 84 52.4
CDE09G0721 Ceratophyllum demersum HOM05D003313 ORTHO05D004217 1.3e-16 89.7 84 56.0
DCAR_029312 Daucus carota HOM05D003313 ORTHO05D004217 1.3e-16 89.7 84 56.0
DCAR_029313 Daucus carota HOM05D003313 ORTHO05D004217 1.3e-16 89.7 84 56.0
DCAR_029787 Daucus carota HOM05D003313 ORTHO05D004217 1.3e-16 89.7 84 54.8
DCAR_032260 Daucus carota HOM05D003313 ORTHO05D004217 1.3e-16 89.7 84 56.0
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 1.3e-16 89.7 84 56.0
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 1.3e-16 89.7 84 54.8
Cpa.g.sc17.15 Carica papaya HOM05D003313 ORTHO05D004217 1.8e-16 89.4 77 62.3
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 1.8e-16 89.4 87 51.7
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 2.3e-16 89.0 84 54.8
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 2.3e-16 89.0 84 54.8
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 2.3e-16 89.0 84 51.2
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 2.3e-16 89.0 84 51.2
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 3.0e-16 88.6 84 56.0
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 3.0e-16 88.6 84 54.8
Sc10g0005440 Simmondsia chinensis HOM05D003313 ORTHO05D004217 3.0e-16 88.6 84 53.6
Sc10g0006280 Simmondsia chinensis HOM05D003313 ORTHO05D004217 3.0e-16 88.6 84 53.6
TPR.G8371 Trifolium pratense HOM05D003313 ORTHO05D004217 3.0e-16 88.6 84 56.0
unitig_699.g19829 Utricularia gibba HOM05D003313 ORTHO05D004217 3.0e-16 88.6 84 54.8
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 3.9e-16 88.2 84 56.0
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 3.9e-16 88.2 84 56.0
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 3.9e-16 88.2 84 54.8
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 5.1e-16 87.8 84 54.8
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 8.7e-16 87.0 84 53.6
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 8.7e-16 87.0 84 54.8
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 8.7e-16 87.0 87 54.0
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 1.1e-15 86.7 84 53.6
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 1.1e-15 86.7 84 53.6
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 1.5e-15 86.3 84 53.6
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 1.5e-15 86.3 84 53.6
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 1.5e-15 86.3 90 54.4
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 1.9e-15 85.9 84 53.6
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 3.3e-15 85.1 84 54.8
ATR0620G069 Amborella trichopoda HOM05D003313 ORTHO05D004217 4.3e-15 84.7 89 52.8
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 5.6e-15 84.3 90 54.4
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 5.6e-15 84.3 85 54.1
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 5.6e-15 84.3 90 53.3
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 1.6e-14 82.8 88 51.1
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 2.1e-14 82.4 88 52.3
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 2.8e-14 82.0 88 51.1
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 8.1e-14 80.5 90 51.1
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 1.4e-13 79.7 85 50.6
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 2.0e-12 75.9 84 48.8
SEGI_06427 Sequoiadendron giganteum HOM05D003313 ORTHO05D004217 2.0e-12 75.9 85 54.1
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 1.0e-11 73.6 91 48.4
SMO116G0300 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 1.1e-10 70.1 84 50.0
Pp3c1_36370 Physcomitrium patens HOM05D003313 ORTHO05D004217 4.2e-10 68.2 85 50.6
Mapoly0031s0124 Marchantia polymorpha HOM05D003313 ORTHO05D004217 2.7e-09 65.5 84 42.9
CBR_g3034 Chara braunii HOM05D003313 ORTHO05D004217 1.8e-08 62.8 84 41.7
BcaNung07352 Brassica carinata HOM05D003313 ORTHO05D004217 6.7e-08 60.8 61 54.1
CBR_g53818 Chara braunii HOM05D003313 ORTHO05D004217 1.1e-07 60.1 84 40.5
DCAR_032163 Daucus carota HOM05D003313 ORTHO05D004217 1.9e-07 59.3 61 45.9


User provided reference genes

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