Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 3.9e-210 734.6 374 100.0
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 1.1e-185 653.3 375 90.1
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 2.9e-181 638.6 422 81.0
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 7.6e-174 614.0 353 89.5
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 1.1e-151 540.4 377 75.6
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 4.5e-150 535.0 375 74.9
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 1.0e-146 523.9 366 75.1
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 6.3e-144 514.6 376 72.1
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 2.0e-142 509.6 353 75.1
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 1.1e-140 503.8 354 73.4
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 1.8e-138 496.5 375 71.5
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 8.8e-138 494.2 377 70.8
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 5.7e-137 491.5 372 71.5
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 9.8e-137 490.7 376 70.5
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 4.8e-136 488.4 377 70.3
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 8.3e-136 487.6 372 71.0
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.8e-135 486.5 372 70.7
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 5.9e-134 481.5 372 70.2
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.7e-133 479.9 376 68.4
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 2.5e-132 476.1 424 64.6
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 7.2e-132 474.6 377 69.2
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 9.5e-132 474.2 381 69.8
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 8.0e-131 471.1 376 67.8
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 1.0e-130 470.7 354 70.3
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.0e-130 470.7 375 67.2
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 1.4e-130 470.3 383 66.6
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 2.3e-130 469.5 402 63.7
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.3e-130 469.5 384 66.9
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 5.2e-130 468.4 378 69.0
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 8.9e-130 467.6 375 68.8
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.5e-129 466.8 376 66.8
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 3.4e-129 465.7 377 67.4
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 4.4e-129 465.3 375 67.7
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 4.1e-127 458.8 376 68.4
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.1e-127 458.8 367 68.1
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 1.6e-126 456.8 377 64.7
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 1.0e-125 454.1 353 69.1
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 1.3e-125 453.8 376 67.6
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 2.3e-125 453.0 381 65.9
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 5.0e-125 451.8 354 68.9
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 8.6e-125 451.1 353 69.1
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 9.5e-124 447.6 377 66.3
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 1.6e-123 446.8 377 66.6
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 2.8e-123 446.0 356 67.4
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 2.8e-123 446.0 353 68.8
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 8.0e-123 444.5 379 64.4
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 1.4e-122 443.7 384 65.9
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 2.3e-122 443.0 376 64.6
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 5.2e-122 441.8 353 67.7
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 7.5e-121 438.0 376 63.6
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 9.8e-121 437.6 441 56.7
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 1.4e-119 433.7 381 63.3
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 1.9e-119 433.3 415 61.7
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 2.4e-119 433.0 363 66.4
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 7.0e-119 431.4 376 64.4
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 1.2e-118 430.6 359 65.2
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.3e-117 426.4 352 64.8
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 1.1e-116 424.1 354 63.6
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.1e-116 424.1 377 62.6
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.5e-116 423.7 400 62.0
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 1.5e-116 423.7 352 64.2
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 1.9e-116 423.3 383 63.2
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 1.2e-115 420.6 354 65.3
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 1.2e-115 420.6 426 58.2
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 1.6e-115 420.2 381 64.0
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 1.6e-115 420.2 379 63.9
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 4.7e-115 418.7 377 61.3
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 1.1e-114 417.5 354 63.0
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 1.5e-113 413.7 355 63.9
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 2.6e-113 412.9 374 63.6
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 1.3e-112 410.6 374 63.4
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 1.3e-112 410.6 375 62.7
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 1.7e-112 410.2 360 65.0
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 1.7e-112 410.2 357 64.1
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 6.4e-112 408.3 391 61.1
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 8.3e-112 407.9 381 60.4
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 1.4e-111 407.1 375 60.3
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 3.2e-111 406.0 373 63.5
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 3.2e-111 406.0 354 63.0
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 7.0e-111 404.8 376 61.2
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 2.7e-110 402.9 380 61.6
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 3.5e-110 402.5 375 59.7
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 1.0e-109 401.0 377 60.2
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 1.7e-109 400.2 325 67.4
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 3.0e-109 399.4 359 64.6
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 3.9e-109 399.1 353 62.0
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 6.6e-109 398.3 376 61.4
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 2.5e-108 396.4 355 63.7
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 4.3e-108 395.6 389 61.4
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 2.8e-107 392.9 360 62.2
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 6.2e-107 391.7 355 61.1
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 6.8e-106 388.3 361 60.7
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 7.5e-105 384.8 381 60.4
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 9.2e-103 377.9 378 60.3
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 2.1e-102 376.7 378 60.1
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 2.1e-102 376.7 377 57.0
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 4.6e-102 375.6 378 58.2
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 1.1e-100 370.9 282 68.4
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 2.4e-98 363.2 360 59.7
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 1.2e-97 360.9 381 57.0
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 2.0e-97 360.1 353 58.4
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 7.6e-97 358.2 359 57.9
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 7.6e-97 358.2 358 60.1
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 7.6e-97 358.2 379 57.0
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 1.4e-95 354.0 380 58.2
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 3.2e-95 352.8 416 52.2
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.6e-94 350.5 311 62.7
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 4.6e-94 349.0 357 59.4
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 2.3e-93 346.7 361 56.2
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 6.6e-93 345.1 331 58.9
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 8.7e-93 344.7 380 57.4
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 8.7e-93 344.7 380 57.4
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 1.5e-92 344.0 287 66.9
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 2.5e-92 343.2 388 53.6
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 2.5e-92 343.2 378 56.6
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 5.6e-92 342.0 353 56.7
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.6e-91 340.5 357 57.1
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.8e-90 337.0 355 55.5
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 6.9e-90 335.1 503 45.3
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 7.6e-89 331.6 392 53.6
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 9.9e-89 331.3 356 57.0
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 1.2e-86 324.3 358 55.6
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 8.7e-85 318.2 340 57.6
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 2.8e-83 313.2 404 49.3
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 3.4e-81 306.2 271 63.5
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 9.3e-79 298.1 481 43.7
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 3.3e-76 289.7 399 49.4
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 3.7e-75 286.2 285 57.2
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 3.1e-74 283.1 406 47.0
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 4.0e-66 256.1 167 76.6
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 6.5e-64 248.8 382 45.0
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 1.0e-61 241.5 251 57.4
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.1e-60 238.0 304 51.0
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.1e-60 238.0 304 51.0
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 9.7e-60 235.0 187 72.7
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 2.3e-53 213.8 315 47.0
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 8.8e-53 211.8 222 55.9
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 6.9e-50 202.2 118 82.2
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 5.0e-48 196.1 99 93.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 5.0e-48 196.1 99 93.9
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 2.5e-47 193.7 686 28.6
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 1.0e-45 188.3 150 62.7
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 2.4e-42 177.2 93 90.3
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 1.4e-39 167.9 219 50.2
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 1.2e-38 164.9 232 44.0
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 4.7e-38 162.9 212 51.9
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.5e-31 141.4 97 77.3
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 2.8e-27 127.1 71 80.3
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 7.7e-25 119.0 186 43.5
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 1.7e-24 117.9 151 50.3
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 3.2e-23 113.6 122 42.6
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 5.5e-23 112.8 368 31.2
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 3.6e-22 110.2 94 54.3
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.0e-21 108.6 65 78.5
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 5.2e-21 106.3 164 43.9
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 8.6e-16 89.0 79 54.4
Psat6g089360 Pisum sativum HOM05D004432 ORTHO05D005427 2.6e-12 77.4 100 47.0
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 2.7e-09 67.4 63 55.6
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 1.1e-07 62.0 74 48.6
AUR62036780 Chenopodium quinoa HOM05D056044 ORTHO05D137976 2.1e-06 57.8 42 59.5


User provided reference genes

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