Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004518 Sechium edule HOM05D006941 ORTHO05D008361 6.8e-34 146.7 73 100.0
PGR004G2827 Punica granatum HOM05D006941 ORTHO05D008361 1.8e-26 122.1 73 83.6
Phvul.007G158300 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 2.0e-25 118.6 70 82.9
Manes.14G117300 Manihot esculenta HOM05D006941 ORTHO05D008361 2.6e-25 118.2 73 80.8
Manes.03G190000 Manihot esculenta HOM05D006941 ORTHO05D008361 7.5e-25 116.7 67 83.6
CiPaw.02G087700 Carya illinoinensis HOM05D006941 ORTHO05D008361 9.8e-25 116.3 73 79.5
Ca_09608_v3 Cicer arietinum L. HOM05D006941 ORTHO05D008361 9.8e-25 116.3 70 80.0
QL06p006942 Quercus lobata HOM05D006941 ORTHO05D008361 9.8e-25 116.3 65 81.5
ClCG06G005480 Citrullus lanatus HOM05D006941 ORTHO05D008361 1.7e-24 115.5 88 70.5
Lalb_Chr22g0358511 Lupinus albus HOM05D006941 ORTHO05D008361 2.2e-24 115.2 70 81.4
Phvul.010G109000 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 2.2e-24 115.2 70 78.6
Phvul.L002281 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 2.2e-24 115.2 70 78.6
ECA233G1626 Erigeron canadensis HOM05D006941 ORTHO05D008361 2.8e-24 114.8 66 81.8
Glyma.10G044600 Glycine max HOM05D006941 ORTHO05D008361 2.8e-24 114.8 70 78.6
Glyma.13G132200 Glycine max HOM05D006941 ORTHO05D008361 2.8e-24 114.8 70 78.6
Gorai.005G056700 Gossypium raimondii HOM05D006941 ORTHO05D008361 2.8e-24 114.8 67 80.6
FvH4_4g16990 Fragaria vesca HOM05D006941 ORTHO05D008361 4.9e-24 114.0 73 79.5
FAN07G2315 Fragaria x ananassa HOM05D006941 ORTHO05D008361 4.9e-24 114.0 73 79.5
FAN12G1403 Fragaria x ananassa HOM05D006941 ORTHO05D008361 4.9e-24 114.0 73 79.5
FAN12G3786 Fragaria x ananassa HOM05D006941 ORTHO05D008361 4.9e-24 114.0 73 79.5
TWI53G0190 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 4.9e-24 114.0 72 80.6
Eucgr.H03704 Eucalyptus grandis HOM05D006941 ORTHO05D008361 6.3e-24 113.6 73 79.5
Lj5g0014316 Lotus japonicus HOM05D006941 ORTHO05D008361 6.3e-24 113.6 70 78.6
Lalb_Chr14g0364951 Lupinus albus HOM05D006941 ORTHO05D008361 6.3e-24 113.6 70 81.4
Potri.005G071700 Populus trichocarpa HOM05D006941 ORTHO05D008361 6.3e-24 113.6 73 78.1
Gohir.A02G045400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 8.3e-24 113.2 67 79.1
Gohir.D02G051400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 8.3e-24 113.2 67 79.1
Psat6g067840 Pisum sativum HOM05D006941 ORTHO05D008361 8.3e-24 113.2 70 77.1
Prupe.1G143700 Prunus persica HOM05D006941 ORTHO05D008361 1.1e-23 112.8 73 78.1
CSS0029112 Camellia sinensis var. sinensis HOM05D006941 ORTHO05D008361 1.4e-23 112.5 73 75.3
TWI09G0325 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 1.4e-23 112.5 73 79.5
Migut.G00223 Erythranthe guttata HOM05D006941 ORTHO05D008361 1.8e-23 112.1 73 72.6
Oeu010965.1 Olea europaea HOM05D006941 ORTHO05D008361 1.8e-23 112.1 63 84.1
CANSAT78G0092 Cannabis sativa HOM05D006941 ORTHO05D008361 2.4e-23 111.7 73 78.1
Thecc.04G275300 Theobroma cacao HOM05D006941 ORTHO05D008361 2.4e-23 111.7 67 77.6
Eucgr.H03682 Eucalyptus grandis HOM05D006941 ORTHO05D008361 3.1e-23 111.3 73 78.1
Actinidia32379 Actinidia chinensis HOM05D006941 ORTHO05D008361 4.1e-23 110.9 67 77.6
HanXRQChr05g0154771 Helianthus annuus HOM05D006941 ORTHO05D008361 5.4e-23 110.5 66 80.3
Peaxi162Scf01067g00024 Petunia axillaris HOM05D006941 ORTHO05D008361 5.4e-23 110.5 70 77.1
RcHm_v2.0_Chr4g0420661 Rosa chinensis HOM05D006941 ORTHO05D008361 5.4e-23 110.5 73 78.1
FAN22G2172 Fragaria x ananassa HOM05D006941 ORTHO05D008361 9.1e-23 109.8 73 78.1
Nitab4.5_0001624g0050 Nicotiana tabacum HOM05D006941 ORTHO05D008361 9.1e-23 109.8 73 74.0
FAN17G2868 Fragaria x ananassa HOM05D006941 ORTHO05D008361 1.2e-22 109.4 73 76.7
Sopen01g029770 Solanum pennellii HOM05D006941 ORTHO05D008361 1.2e-22 109.4 73 74.0
Oeu029280.1 Olea europaea HOM05D006941 ORTHO05D008361 1.6e-22 109.0 62 83.9
Solyc01g067820.3 Solanum lycopersicum HOM05D006941 ORTHO05D008361 1.6e-22 109.0 73 74.0
PGSC0003DMG400022846 Solanum tuberosum HOM05D006941 ORTHO05D008361 1.6e-22 109.0 73 74.0
Duzib151G0434 Durio zibethinus HOM05D006941 ORTHO05D008361 2.0e-22 108.6 67 77.6
Medtr1g068580 Medicago truncatula HOM05D006941 ORTHO05D008361 2.0e-22 108.6 69 76.8
EL10As5g23584 Beta vulgaris HOM05D006941 ORTHO05D008361 2.7e-22 108.2 71 77.5
Zm00001eb163280 Zea mays HOM05D006941 ORTHO05D008361 3.5e-22 107.8 70 71.4
Os11g0107450 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 4.5e-22 107.5 67 74.6
Atru.chr4.2738 Acer truncatum HOM05D006941 ORTHO05D008361 1.3e-21 105.9 73 75.3
Medtr2g005070 Medicago truncatula HOM05D006941 ORTHO05D008361 1.3e-21 105.9 68 76.5
Zm00001eb094170 Zea mays HOM05D006941 ORTHO05D008361 1.3e-21 105.9 70 70.0
Carub.0005s2918 Capsella rubella HOM05D006941 ORTHO05D008361 1.7e-21 105.5 69 73.9
Os12g0106550 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 2.3e-21 105.1 67 73.1
arahy.Tifrunner.gnm1.ann1.UB09PE Arachis hypogaea HOM05D006941 ORTHO05D008361 6.6e-21 103.6 72 76.4
Sabra07G0080600 Salix brachista HOM05D006941 ORTHO05D008361 6.6e-21 103.6 72 73.6
PSO302G0016 Papaver somniferum HOM05D006941 ORTHO05D008361 8.6e-21 103.2 63 77.8
Rhsim02G0014500 Rhododendron simsii HOM05D006941 ORTHO05D008361 8.6e-21 103.2 67 73.1
arahy.Tifrunner.gnm1.ann1.DDI179 Arachis hypogaea HOM05D006941 ORTHO05D008361 1.1e-20 102.8 83 68.7
A09p54410 Brassica napus HOM05D006941 ORTHO05D008361 1.1e-20 102.8 69 75.4
BraA09t40854Z Brassica rapa HOM05D006941 ORTHO05D008361 1.1e-20 102.8 69 75.4
C08p37290 Brassica napus HOM05D006941 ORTHO05D008361 1.5e-20 102.4 69 73.9
BolC8t51307H Brassica oleracea HOM05D006941 ORTHO05D008361 1.5e-20 102.4 69 73.9
BcaC07g42761 Brassica carinata HOM05D006941 ORTHO05D008361 1.9e-20 102.1 69 73.9
DCAR_030574 Daucus carota HOM05D006941 ORTHO05D008361 1.9e-20 102.1 62 75.8
Thhalv10006352m.g Eutrema salsugineum HOM05D006941 ORTHO05D008361 1.9e-20 102.1 69 73.9
CARHR172790 Cardamine hirsuta HOM05D006941 ORTHO05D008361 2.5e-20 101.7 65 70.8
Sp5g00970 Schrenkiella parvula HOM05D006941 ORTHO05D008361 2.5e-20 101.7 69 73.9
unitig_22.g6332 Utricularia gibba HOM05D006941 ORTHO05D008361 2.5e-20 101.7 72 65.3
CAN.G1327.4 Capsicum annuum HOM05D006941 ORTHO05D008361 3.3e-20 101.3 73 68.5
Lj4g0022805 Lotus japonicus HOM05D006941 ORTHO05D008361 9.5e-20 99.8 70 74.3
SalBow1G8344 Salvia bowleyana HOM05D006941 ORTHO05D008361 1.2e-19 99.4 60 78.3
vmacro15274 Vaccinium macrocarpon HOM05D006941 ORTHO05D008361 1.2e-19 99.4 70 70.0
THA.LOC104820449 Tarenaya hassleriana HOM05D006941 ORTHO05D008361 2.8e-19 98.2 61 75.4
AT3G62450 Arabidopsis thaliana HOM05D006941 ORTHO05D008361 3.6e-19 97.8 69 69.6
AL5G45260 Arabidopsis lyrata HOM05D006941 ORTHO05D008361 6.1e-19 97.1 69 69.6
BcaB02g07336 Brassica carinata HOM05D006941 ORTHO05D008361 6.1e-19 97.1 62 72.6
Hund22020 Selenicereus undatus HOM05D006941 ORTHO05D008361 1.0e-18 96.3 71 71.8
SGA_v2.0_scaffold57G20266 Striga asiatica HOM05D006941 ORTHO05D008361 1.4e-18 95.9 96 55.2
Aa31LG10G16360 Aethionema arabicum HOM05D006941 ORTHO05D008361 2.3e-18 95.1 62 71.0
VMungo0464G0431 Vigna mungo HOM05D006941 ORTHO05D008361 2.6e-17 91.7 129 45.0
SHI00325 Sapria himalayana HOM05D006941 ORTHO05D008361 4.4e-17 90.9 73 68.5
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 9.8e-17 89.7 69 63.8
MD16G1176900 Malus domestica HOM05D006941 ORTHO05D008361 1.8e-15 85.5 53 83.0
HanXRQChr15g0466771 Helianthus annuus HOM05D006941 ORTHO05D008361 7.0e-15 83.6 131 41.2
SEGI_10041 Sequoiadendron giganteum HOM05D006941 ORTHO05D008361 7.0e-15 83.6 61 63.9
Cfa015511 Carpinus fangiana HOM05D006941 ORTHO05D008361 1.2e-14 82.8 65 67.7
Haze_01039 Corylus avellana HOM05D006941 ORTHO05D008361 1.2e-14 82.8 73 64.4
RcHm_v2.0_Chr1g0363231 Rosa chinensis HOM05D006941 ORTHO05D008361 5.9e-14 80.5 50 78.0
PGSC0003DMG400029912 Solanum tuberosum HOM05D006941 ORTHO05D008361 1.3e-13 79.3 50 74.0
BcaC07g40728 Brassica carinata HOM05D006941 ORTHO05D008361 4.0e-10 67.8 69 59.4
Sabra05G0058700 Salix brachista HOM05D006941 ORTHO05D008361 4.0e-10 67.8 164 31.1
vmacro16859 Vaccinium macrocarpon HOM05D000537 ORTHO05D000415 4.0e-10 67.8 37 81.1
Eucgr.H03709 Eucalyptus grandis HOM05D006941 ORTHO05D008361 6.8e-10 67.0 43 79.1
Sc19g0004830 Simmondsia chinensis HOM05D006941 ORTHO05D008361 1.5e-09 65.9 37 81.1
SGA_v2.0_scaffold114G31931 Striga asiatica HOM05D006941 ORTHO05D008361 2.0e-09 65.5 51 60.8
VMungo0720G2266 Vigna mungo HOM05D006941 ORTHO05D008361 2.6e-09 65.1 40 75.0
Ciclev10006724m.g Citrus clementina HOM05D006941 ORTHO05D008361 3.4e-09 64.7 35 82.9
COL.COLO4_13955 Corchorus olitorius HOM05D006941 ORTHO05D008361 3.4e-09 64.7 36 83.3
MSTRG.24772 Avicennia marina HOM05D006941 ORTHO05D008361 5.8e-09 63.9 33 84.8
Lsat_1_v5_gn_2_28060 Lactuca sativa HOM05D006941 ORTHO05D008361 5.8e-09 63.9 54 59.3
Dinv16400 Davidia involucrata HOM05D006941 ORTHO05D008361 9.8e-09 63.2 35 77.1
Atru.chr2.2418 Acer truncatum HOM05D006941 ORTHO05D008361 2.2e-08 62.0 33 84.8
Medtr2g048470 Medicago truncatula HOM05D006941 ORTHO05D008361 3.7e-08 61.2 40 72.5
Eucgr.H03675 Eucalyptus grandis HOM05D006941 ORTHO05D008361 6.4e-08 60.5 34 79.4
Oeu048197.1 Olea europaea HOM05D010625 ORTHO05D008361 1.1e-07 59.7 32 84.4
MELO3C035183.2 Cucumis melo HOM05D006941 ORTHO05D008361 1.9e-07 58.9 30 90.0
Eucgr.H03674 Eucalyptus grandis HOM05D025724 ORTHO05D008361 2.4e-07 58.5 36 77.8


User provided reference genes

Program Settings