Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 4.3e-150 534.6 272 100.0
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 3.4e-123 445.3 272 85.3
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 6.7e-119 431.0 265 84.9
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 7.7e-107 391.0 246 82.5
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 8.0e-80 301.2 271 59.8
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 2.3e-79 299.7 265 63.0
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 5.2e-79 298.5 267 60.3
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 2.6e-78 296.2 253 63.6
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.7e-78 295.0 257 60.7
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.7e-78 295.0 257 60.7
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 7.5e-78 294.7 252 61.5
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.8e-78 294.3 265 59.2
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.3e-77 293.9 265 60.0
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.1e-76 290.8 265 59.6
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 1.4e-76 290.4 266 59.4
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.4e-76 290.4 265 59.2
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 3.1e-76 289.3 281 58.7
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 4.1e-76 288.9 264 61.0
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 2.0e-75 286.6 284 57.4
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.0e-74 284.3 255 60.0
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 2.2e-74 283.1 254 62.2
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.8e-74 282.3 255 59.6
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 9.4e-73 277.7 269 57.6
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 1.2e-72 277.3 259 57.5
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 2.1e-72 276.6 281 55.2
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 1.0e-71 274.2 261 57.1
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 5.2e-71 271.9 258 58.9
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 5.2e-71 271.9 257 57.6
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 1.2e-70 270.8 262 55.3
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 7.5e-70 268.1 255 58.0
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 2.2e-69 266.5 262 54.6
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 2.8e-69 266.2 257 56.8
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.9e-69 265.4 263 57.4
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 6.3e-69 265.0 263 56.7
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 8.3e-69 264.6 263 56.3
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 4.1e-68 262.3 271 55.7
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 5.4e-68 261.9 265 56.2
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 9.2e-68 261.2 257 56.4
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 7.7e-67 258.1 257 56.4
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 1.0e-66 257.7 257 57.6
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 1.3e-66 257.3 264 52.7
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.3e-66 257.3 259 57.5
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 2.3e-66 256.5 254 55.5
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 2.3e-66 256.5 262 54.2
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 5.0e-66 255.4 260 53.1
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 1.1e-65 254.2 258 55.8
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 1.5e-65 253.8 267 54.3
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 2.5e-65 253.1 263 53.2
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 9.5e-65 251.1 257 55.3
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 1.6e-64 250.4 261 53.6
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 2.1e-64 250.0 263 53.2
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 1.4e-63 247.3 258 52.7
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.4e-63 247.3 264 51.1
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.8e-63 246.9 222 58.6
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 1.8e-63 246.9 261 52.1
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.8e-63 245.0 236 57.2
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 8.9e-63 244.6 264 50.8
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.2e-62 244.2 222 57.2
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 1.5e-62 243.8 253 54.5
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 2.6e-62 243.0 263 51.3
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.4e-62 242.7 262 50.4
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.7e-61 240.4 264 50.0
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 2.2e-61 240.0 255 53.7
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.7e-61 239.2 263 50.6
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 1.4e-60 237.3 260 53.5
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 4.1e-60 235.7 269 48.3
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 7.0e-60 235.0 256 51.2
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 6.6e-58 228.4 263 49.8
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 6.6e-58 228.4 261 52.5
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 1.5e-57 227.3 261 48.7
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 1.9e-57 226.9 263 51.0
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 2.5e-57 226.5 256 49.2
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 2.5e-57 226.5 253 51.8
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 4.3e-57 225.7 252 50.8
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 1.2e-56 224.2 255 48.2
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.6e-56 223.8 262 49.6
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 6.2e-56 221.9 261 48.7
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 8.0e-56 221.5 252 49.6
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 1.4e-55 220.7 259 52.9
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 3.1e-55 219.5 262 48.5
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 3.1e-55 219.5 257 50.2
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 4.0e-55 219.2 261 47.5
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 2.6e-54 216.5 220 55.9
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 3.4e-54 216.1 254 46.5
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 7.5e-54 214.9 268 46.6
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 9.8e-54 214.5 252 50.4
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 1.3e-53 214.2 252 49.6
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 4.9e-53 212.2 281 47.3
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 6.4e-53 211.8 170 63.5
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 1.1e-52 211.1 256 48.8
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 1.9e-52 210.3 251 47.0
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 7.0e-52 208.4 256 50.0
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 7.0e-52 208.4 265 46.8
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 1.2e-51 207.6 256 48.8
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.6e-51 207.2 259 49.0
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 1.6e-51 207.2 253 48.6
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 2.7e-51 206.5 255 49.0
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 2.7e-51 206.5 259 50.2
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 3.5e-51 206.1 257 48.6
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 3.5e-51 206.1 258 46.1
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 6.0e-51 205.3 253 48.2
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 6.0e-51 205.3 253 48.2
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 1.0e-50 204.5 253 49.0
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 1.0e-50 204.5 253 49.0
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.0e-50 204.5 272 46.0
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 1.0e-50 204.5 272 46.0
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 2.3e-50 203.4 256 49.2
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 3.0e-50 203.0 256 46.9
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 5.0e-50 202.2 257 47.1
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 1.1e-49 201.1 253 47.0
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 3.3e-49 199.5 255 48.6
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 3.3e-49 199.5 260 45.4
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 4.3e-49 199.1 257 47.1
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 9.5e-49 198.0 209 50.7
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 9.5e-49 198.0 200 51.5
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 3.6e-48 196.1 203 50.7
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 6.2e-48 195.3 256 46.9
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 6.2e-48 195.3 254 45.3
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 8.1e-48 194.9 260 46.2
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 8.1e-48 194.9 253 47.4
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 1.8e-47 193.7 258 45.0
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.1e-47 193.0 192 51.6
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.1e-47 193.0 192 51.6
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 4.0e-47 192.6 202 50.0
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 2.6e-46 189.9 202 49.5
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 4.4e-46 189.1 266 45.1
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 4.4e-46 189.1 257 43.2
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.8e-46 188.7 256 46.1
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 6.4e-45 185.3 202 48.5
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 8.3e-45 184.9 260 45.0
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 9.2e-44 181.4 256 42.2
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 2.7e-43 179.9 251 48.2
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 4.3e-41 172.6 117 72.6
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 2.8e-40 169.9 251 43.0
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 2.8e-40 169.9 258 39.5
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 8.1e-40 168.3 277 40.4
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 4.0e-39 166.0 113 69.0
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 2.0e-38 163.7 253 36.8
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 2.6e-38 163.3 170 51.8
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.9e-37 159.8 207 48.8
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 1.1e-36 157.9 215 45.1
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.4e-36 156.8 103 72.8
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 4.1e-36 156.0 113 63.7
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 2.7e-35 153.3 158 48.7
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 7.8e-35 151.8 150 54.7
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.3e-33 146.4 130 56.2
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 7.1e-28 128.6 155 52.9
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 5.6e-25 119.0 108 48.1
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 4.5e-22 109.4 112 49.1
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.9e-22 108.2 82 67.1
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 2.7e-19 100.1 254 31.9
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.6e-16 90.9 70 61.4
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 2.6e-14 83.6 91 40.7
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 7.6e-14 82.0 283 27.6
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 6.4e-13 79.0 98 34.7
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 3.2e-12 76.6 285 26.0
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 5.1e-10 69.3 89 32.6
SEGI_07745 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 2.1e-08 63.9 274 26.6


User provided reference genes

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