Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 5.6e-170 600.9 310 100.0
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 1.5e-98 363.6 207 90.3
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.9e-98 363.2 207 89.9
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 2.5e-98 362.8 207 89.9
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 4.8e-97 358.6 207 88.9
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 4.1e-88 328.9 210 79.0
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 5.5e-85 318.5 210 76.7
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 4.7e-84 315.5 208 78.8
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 8.8e-83 311.2 198 78.3
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.5e-82 310.5 192 79.7
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 3.3e-82 309.3 201 78.1
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 4.4e-82 308.9 206 76.2
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.4e-82 308.9 190 80.5
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 4.4e-82 308.9 203 79.3
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 7.4e-82 308.1 207 75.8
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 7.4e-82 308.1 202 78.2
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 7.4e-82 308.1 206 79.1
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.7e-81 307.0 190 80.0
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 1.7e-81 307.0 207 74.4
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 1.7e-81 307.0 213 70.9
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.8e-81 306.2 209 75.6
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 2.8e-81 306.2 202 77.2
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 3.7e-81 305.8 203 79.3
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 4.8e-81 305.4 206 76.2
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 6.3e-81 305.1 190 79.5
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 8.2e-81 304.7 229 68.1
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 8.2e-81 304.7 203 76.8
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 1.1e-80 304.3 246 67.9
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.1e-80 304.3 202 76.7
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 2.4e-80 303.1 204 75.0
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 3.1e-80 302.8 210 73.8
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 7.0e-80 301.6 201 75.6
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 9.1e-80 301.2 197 76.1
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 9.1e-80 301.2 205 75.6
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.6e-79 300.4 200 76.0
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 3.5e-79 299.3 207 73.4
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 3.5e-79 299.3 207 74.9
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 4.5e-79 298.9 209 71.3
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 4.5e-79 298.9 191 77.5
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.9e-79 298.5 209 74.2
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.9e-79 298.5 209 74.2
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 5.9e-79 298.5 222 68.9
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 5.9e-79 298.5 211 72.0
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.0e-78 297.7 191 79.1
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.3e-78 297.4 211 72.0
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 2.9e-78 296.2 199 73.9
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 6.5e-78 295.0 214 69.6
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 8.5e-78 294.7 203 73.4
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.1e-77 294.3 203 72.9
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 1.9e-77 293.5 213 70.9
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 1.9e-77 293.5 232 68.1
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 2.5e-77 293.1 203 72.9
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 4.2e-77 292.4 220 66.8
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 5.5e-77 292.0 210 70.5
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 5.5e-77 292.0 203 74.9
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 1.6e-76 290.4 215 67.9
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.1e-76 290.0 189 74.1
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 2.7e-76 289.7 180 75.0
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 6.1e-76 288.5 186 74.7
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 6.1e-76 288.5 188 73.9
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.0e-75 287.7 256 64.1
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.8e-75 287.0 187 74.3
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.2e-75 285.4 217 70.5
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 8.8e-75 284.6 217 70.5
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 2.0e-74 283.5 225 68.4
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 9.7e-74 281.2 201 71.6
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.3e-73 280.8 210 70.0
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.7e-73 280.4 197 71.6
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 1.7e-73 280.4 197 72.6
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.2e-73 280.0 208 67.3
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.8e-73 279.6 209 67.5
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 3.7e-73 279.3 296 55.1
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.4e-72 277.3 201 69.7
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.8e-72 276.9 201 69.7
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.4e-72 276.6 205 67.3
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 2.4e-72 276.6 205 67.3
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.1e-72 276.2 172 78.5
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 3.1e-72 276.2 189 75.7
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 7.0e-72 275.0 205 68.8
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 1.6e-71 273.9 205 68.3
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 2.0e-71 273.5 201 68.7
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 4.5e-71 272.3 201 68.7
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 4.5e-71 272.3 210 67.1
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 5.9e-71 271.9 201 69.2
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 7.7e-71 271.6 196 70.9
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.0e-70 271.2 205 67.8
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.0e-70 271.2 202 68.8
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 1.3e-70 270.8 204 68.1
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.3e-70 270.8 204 68.1
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.7e-70 270.4 158 82.9
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 2.2e-70 270.0 204 68.1
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 3.8e-70 269.2 195 71.8
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 5.0e-70 268.9 197 70.1
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 5.0e-70 268.9 162 80.2
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 8.5e-70 268.1 174 76.4
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 1.1e-69 267.7 201 69.2
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.1e-69 267.7 199 68.8
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.1e-69 267.7 193 71.0
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 1.9e-69 266.9 193 71.0
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 2.5e-69 266.5 198 70.2
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 4.2e-69 265.8 205 66.3
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 5.5e-69 265.4 193 70.5
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 9.4e-69 264.6 211 65.9
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 9.4e-69 264.6 196 67.9
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 1.6e-68 263.8 200 65.0
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 2.1e-68 263.5 211 65.4
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 6.1e-68 261.9 205 66.8
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 1.0e-67 261.2 181 70.7
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 8.8e-67 258.1 195 69.2
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 8.8e-67 258.1 174 73.6
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 1.2e-66 257.7 198 69.2
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 7.5e-66 255.0 198 68.7
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 1.4e-64 250.8 204 66.2
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 3.1e-64 249.6 201 63.2
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 9.1e-64 248.1 166 75.3
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 9.1e-64 248.1 200 64.0
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 7.7e-63 245.0 210 62.4
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 3.8e-62 242.7 156 78.8
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 5.5e-61 238.8 169 68.6
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 3.6e-60 236.1 196 65.8
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 1.7e-57 227.3 168 69.6
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 3.7e-57 226.1 201 60.7
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 3.5e-55 219.5 202 60.4
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 8.6e-54 214.9 128 81.2
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.9e-53 213.8 194 58.8
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 1.4e-51 207.6 124 79.8
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.2e-50 204.5 123 78.9
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.8e-48 197.2 154 68.2
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.3e-46 191.0 178 56.7
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 6.6e-46 188.7 207 52.2
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 3.3e-45 186.4 176 56.8
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 4.3e-45 186.0 187 57.2
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 5.6e-45 185.7 150 60.7
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.3e-43 180.3 197 52.8
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 6.8e-43 178.7 118 71.2
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 1.3e-41 174.5 103 82.5
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 2.2e-41 173.7 107 80.4
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.0e-38 164.9 177 51.4
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 8.6e-38 161.8 93 81.7
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.2e-36 157.9 149 53.7
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 2.6e-34 150.2 164 47.6
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 3.0e-30 136.7 104 65.4
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 5.1e-30 136.0 173 46.2
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.6e-20 103.2 209 37.8
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 2.6e-18 97.1 78 59.0
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 3.4e-18 96.7 106 52.8
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 3.4e-18 96.7 146 39.7
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 5.8e-18 95.9 72 63.9
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 2.2e-17 94.0 72 62.5
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 8.4e-17 92.0 57 71.9
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.3e-14 84.7 175 33.7
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.6e-12 77.8 80 53.8
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.4e-11 74.7 62 62.9
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 9.0e-11 72.0 56 66.1
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 3.4e-10 70.1 40 85.0


User provided reference genes

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