Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 1.0e-179 633.3 307 100.0
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 3.5e-124 448.7 353 67.4
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 8.1e-121 437.6 359 65.2
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 8.6e-107 391.0 353 59.5
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.2e-105 387.1 361 57.6
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.6e-105 386.7 357 58.3
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.6e-105 386.7 362 58.0
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 4.7e-105 385.2 371 56.3
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 4.7e-105 385.2 344 59.3
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 5.2e-104 381.7 361 57.6
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 5.8e-103 378.3 361 58.7
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 5.8e-103 378.3 358 57.3
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 9.9e-103 377.5 362 56.4
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 2.9e-102 375.9 357 57.7
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 7.1e-101 371.3 369 56.4
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 9.3e-101 370.9 345 58.6
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.2e-100 370.5 375 54.9
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 1.2e-100 370.5 358 57.3
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 2.1e-100 369.8 349 56.7
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.0e-99 365.9 397 50.6
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 5.1e-99 365.2 359 55.7
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 1.9e-98 363.2 345 56.5
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 4.3e-98 362.1 398 53.5
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 4.8e-97 358.6 334 56.6
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 3.1e-96 355.9 362 54.1
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 4.0e-96 355.5 321 61.1
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 6.9e-96 354.8 354 55.4
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 5.8e-95 351.7 341 55.7
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 9.9e-95 350.9 348 54.3
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 2.2e-94 349.7 345 55.7
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 3.8e-94 349.0 350 53.1
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.9e-93 346.7 349 53.0
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 3.2e-93 345.9 360 53.9
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 5.4e-93 345.1 348 54.9
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 2.1e-92 343.2 353 53.0
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 3.5e-92 342.4 357 53.5
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 3.5e-92 342.4 359 53.2
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 4.6e-92 342.0 339 52.8
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 6.0e-92 341.7 347 53.6
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.3e-91 339.7 350 53.1
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 2.3e-91 339.7 364 51.6
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 3.9e-91 339.0 351 53.8
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 6.6e-91 338.2 345 53.0
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 1.5e-90 337.0 340 52.9
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 1.5e-90 337.0 363 52.1
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 1.9e-90 336.7 340 52.9
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 2.5e-90 336.3 370 51.4
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 3.3e-90 335.9 255 64.7
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 4.3e-90 335.5 340 52.9
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 4.3e-90 335.5 340 52.9
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 4.3e-90 335.5 337 54.0
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 5.6e-90 335.1 342 53.8
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 7.4e-90 334.7 350 53.1
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 9.6e-90 334.3 344 55.5
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 1.3e-89 334.0 354 52.3
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 1.3e-89 334.0 354 52.3
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 1.3e-89 334.0 342 53.5
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 1.6e-89 333.6 339 53.4
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 1.6e-89 333.6 354 53.1
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 2.1e-89 333.2 340 52.6
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 2.1e-89 333.2 347 53.3
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 2.8e-89 332.8 341 53.7
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 2.8e-89 332.8 341 53.7
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 3.6e-89 332.4 357 50.7
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 3.6e-89 332.4 352 51.7
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 6.2e-89 331.6 340 53.5
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 6.2e-89 331.6 363 51.2
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 1.1e-88 330.9 342 52.6
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 1.8e-88 330.1 355 50.4
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 2.4e-88 329.7 345 52.2
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 3.1e-88 329.3 357 51.0
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 3.1e-88 329.3 352 52.3
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 4.0e-88 328.9 347 52.7
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 5.3e-88 328.6 344 53.8
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 5.3e-88 328.6 352 51.1
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 6.9e-88 328.2 353 51.8
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 9.0e-88 327.8 354 52.3
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 9.0e-88 327.8 344 53.8
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.2e-87 327.4 397 47.6
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 1.2e-87 327.4 353 50.7
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.5e-87 327.0 347 53.0
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 2.6e-87 326.2 348 51.1
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 4.5e-87 325.5 351 53.0
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 7.6e-87 324.7 358 50.3
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 7.6e-87 324.7 340 52.4
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.3e-86 323.9 343 51.6
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 1.7e-86 323.6 336 52.4
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.8e-86 322.4 343 51.6
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 3.8e-86 322.4 346 50.6
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 4.9e-86 322.0 353 50.1
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 6.4e-86 321.6 357 50.7
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 1.4e-85 320.5 376 49.5
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.5e-85 318.5 355 51.8
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 7.1e-85 318.2 348 51.7
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 9.3e-85 317.8 339 53.1
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 1.6e-84 317.0 374 48.9
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.7e-84 316.2 340 52.1
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 1.8e-83 313.5 350 50.3
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.0e-83 312.8 376 48.7
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 3.9e-83 312.4 359 51.3
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 5.1e-83 312.0 340 52.1
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.5e-82 310.5 345 50.1
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.3e-82 309.3 359 49.3
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 7.4e-82 308.1 410 45.1
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 9.6e-82 307.8 351 48.7
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 3.7e-81 305.8 544 38.1
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 3.7e-81 305.8 334 51.5
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 6.2e-81 305.1 343 50.1
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 1.8e-80 303.5 346 49.7
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 2.4e-80 303.1 373 49.9
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 5.8e-79 298.5 375 48.3
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 1.0e-78 297.7 330 50.9
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.7e-78 297.0 333 48.6
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.1e-77 294.3 514 38.5
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 2.5e-77 293.1 341 48.7
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 3.2e-77 292.7 407 44.0
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.7e-76 289.7 347 49.0
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 4.6e-76 288.9 254 58.3
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 1.3e-75 287.3 306 51.0
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 6.9e-72 275.0 351 46.7
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 2.0e-71 273.5 198 66.2
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 7.6e-71 271.6 211 63.5
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.9e-70 269.6 335 47.2
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 9.3e-69 264.6 375 45.1
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 4.3e-66 255.8 296 50.3
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 5.7e-66 255.4 405 40.7
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 1.1e-64 251.1 257 54.5
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.4e-64 250.0 345 43.2
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 9.1e-64 248.1 283 50.9
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 6.5e-62 241.9 194 60.3
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 1.4e-61 240.7 347 41.2
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.5e-61 240.0 370 43.0
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 7.2e-61 238.4 340 40.6
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 3.3e-58 229.6 367 38.4
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 4.1e-56 222.6 207 55.1
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 9.1e-56 221.5 256 51.2
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 4.5e-55 219.2 242 52.5
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.2e-47 194.5 306 40.5
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 3.5e-47 193.0 237 48.1
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 5.9e-47 192.2 238 46.6
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 1.7e-46 190.7 234 46.2
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 8.5e-46 188.3 229 49.8
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 1.8e-40 170.6 517 29.0
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.7e-38 164.1 173 49.1
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 1.7e-33 147.5 311 31.8
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 5.9e-31 139.0 118 59.3
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 7.7e-31 138.7 136 50.7
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 7.8e-23 112.1 192 32.8
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.4e-19 101.3 360 27.2
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 4.9e-17 92.8 235 32.3
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 1.1e-16 91.7 56 71.4
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 1.3e-14 84.7 111 46.8
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 2.3e-14 84.0 95 49.5
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 6.6e-14 82.4 48 79.2
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 8.9e-11 72.0 43 76.7
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 5.8e-10 69.3 96 39.6
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 5.8e-10 69.3 90 43.3
SEGI_35437 Sequoiadendron giganteum HOM05D004534 ORTHO05D005413 4.9e-09 66.2 46 63.0
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 1.7e-06 57.8 81 40.7


User provided reference genes

Program Settings