Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 1.8e-156 555.8 279 100.0
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 3.2e-132 475.3 282 86.5
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 1.3e-130 469.9 283 84.8
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 2.3e-130 469.2 282 85.5
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 5.2e-119 431.4 241 87.1
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 2.9e-117 425.6 289 75.1
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 1.1e-116 423.7 280 77.5
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 1.4e-116 423.3 287 76.7
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 1.4e-116 423.3 260 81.2
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 1.9e-116 422.9 248 83.1
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 3.2e-116 422.2 246 82.5
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 4.2e-116 421.8 277 76.9
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 4.2e-116 421.8 277 76.9
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 4.2e-116 421.8 277 76.9
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 5.4e-116 421.4 239 84.5
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 7.1e-116 421.0 244 82.0
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 7.1e-116 421.0 259 80.7
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 9.3e-116 420.6 281 75.4
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 9.3e-116 420.6 245 82.9
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 1.2e-115 420.2 281 76.9
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 2.1e-115 419.5 283 76.3
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 2.7e-115 419.1 288 74.3
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.7e-115 419.1 277 76.2
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 2.7e-115 419.1 244 82.4
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 3.5e-115 418.7 257 79.8
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 3.5e-115 418.7 244 81.6
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 3.5e-115 418.7 262 79.4
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 4.6e-115 418.3 280 75.4
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 4.6e-115 418.3 245 81.6
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 6.0e-115 417.9 248 82.7
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 1.0e-114 417.2 286 74.8
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 2.3e-114 416.0 280 75.7
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 3.0e-114 415.6 247 82.2
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 3.0e-114 415.6 247 82.2
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 5.1e-114 414.8 265 77.4
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 5.1e-114 414.8 265 77.4
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 8.7e-114 414.1 277 76.2
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 8.7e-114 414.1 277 76.2
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 8.7e-114 414.1 242 81.0
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 1.9e-113 412.9 257 81.3
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 1.9e-113 412.9 248 80.6
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 1.9e-113 412.9 245 81.2
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 4.3e-113 411.8 261 79.3
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 9.6e-113 410.6 245 80.8
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 9.6e-113 410.6 246 80.9
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 9.6e-113 410.6 273 76.2
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.3e-112 410.2 266 74.1
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 2.1e-112 409.5 278 74.8
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 2.1e-112 409.5 242 81.0
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 3.6e-112 408.7 279 73.8
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 4.8e-112 408.3 279 73.8
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 4.8e-112 408.3 236 83.1
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 4.8e-112 408.3 236 80.9
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 1.4e-111 406.8 248 80.2
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 1.8e-111 406.4 235 82.6
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 2.4e-111 406.0 281 73.7
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 2.4e-111 406.0 273 73.6
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 2.4e-111 406.0 270 75.2
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 3.1e-111 405.6 239 79.5
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 3.1e-111 405.6 247 79.4
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 4.0e-111 405.2 281 72.6
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 4.0e-111 405.2 236 80.9
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 4.0e-111 405.2 235 82.1
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 5.3e-111 404.8 277 74.4
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 1.5e-110 403.3 270 75.2
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 2.0e-110 402.9 274 72.3
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 2.6e-110 402.5 222 86.5
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 4.5e-110 401.7 252 76.2
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 5.8e-110 401.4 277 73.6
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 1.7e-109 399.8 282 73.0
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 1.7e-109 399.8 245 78.4
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 1.7e-109 399.8 286 73.8
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 2.9e-109 399.1 246 78.5
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 3.8e-109 398.7 266 74.8
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 6.4e-109 397.9 239 78.7
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 1.1e-108 397.1 235 78.3
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 1.9e-108 396.4 249 77.5
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 1.9e-108 396.4 265 74.0
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.9e-108 396.4 282 71.3
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 2.4e-108 396.0 276 72.5
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 3.2e-108 395.6 286 69.2
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 3.2e-108 395.6 245 77.6
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 9.3e-108 394.0 276 73.2
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 9.3e-108 394.0 276 73.2
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 1.2e-107 393.7 276 73.2
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 2.1e-107 392.9 267 74.2
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 7.9e-107 391.0 282 71.3
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 7.9e-107 391.0 235 79.6
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.0e-106 390.6 273 70.0
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.0e-106 390.6 266 71.8
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 1.3e-106 390.2 245 78.0
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 6.7e-106 387.9 245 75.5
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 1.1e-105 387.1 278 69.1
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 1.5e-105 386.7 277 70.0
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 5.6e-105 384.8 267 70.8
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.3e-104 383.6 236 77.5
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 3.1e-103 379.0 236 77.5
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 5.3e-103 378.3 238 73.1
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 1.7e-101 373.2 268 69.8
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 2.2e-101 372.9 222 79.3
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 3.8e-101 372.1 257 72.4
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 6.4e-101 371.3 283 68.6
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 1.4e-100 370.2 237 75.1
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 2.7e-99 365.9 254 70.1
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 3.5e-99 365.5 368 54.3
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.0e-98 364.0 225 75.6
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 5.6e-97 358.2 276 66.7
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 7.4e-97 357.8 295 65.8
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 3.7e-96 355.5 250 70.4
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.7e-91 339.3 243 68.3
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 7.9e-91 337.8 248 67.3
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 4.3e-89 332.0 222 70.7
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 5.3e-87 325.1 237 66.2
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 1.2e-86 323.9 239 64.9
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 2.2e-85 319.7 191 80.6
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 1.3e-82 310.5 176 84.1
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 1.1e-81 307.4 257 58.4
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 2.0e-78 296.6 235 59.6
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 7.2e-76 288.1 285 54.4
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 2.1e-75 286.6 175 80.0
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 3.0e-74 282.7 222 64.4
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 3.3e-73 279.3 243 60.5
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 1.7e-72 276.9 215 66.5
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 4.2e-68 262.3 260 53.8
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 3.3e-65 252.7 285 49.5
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 4.8e-64 248.8 221 57.5
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 2.1e-59 233.4 142 80.3
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 3.0e-58 229.6 171 63.7
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 1.5e-57 227.3 134 83.6
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 3.1e-55 219.5 273 46.5
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 1.8e-50 203.8 124 81.5
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 6.3e-48 195.3 125 76.8
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 1.1e-47 194.5 229 41.9
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 4.2e-44 182.6 110 75.5
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 1.8e-42 177.2 219 42.0
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 5.2e-42 175.6 220 40.9
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 7.3e-36 155.2 114 69.3
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.0e-34 151.4 84 85.7
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 2.0e-33 147.1 86 76.7
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.8e-31 140.6 147 53.7
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 7.0e-31 138.7 115 62.6
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 2.6e-25 120.2 108 61.1
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 2.9e-24 116.7 85 67.1
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 2.0e-22 110.5 213 31.5
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 7.8e-22 108.6 68 75.0
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.9e-15 87.4 86 54.7
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 9.2e-15 85.1 178 40.4
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.1e-12 78.2 57 61.4
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 2.4e-10 70.5 262 26.0
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 5.2e-10 69.3 241 27.0
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 1.2e-09 68.2 71 52.1
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 1.2e-09 68.2 243 27.6
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 2.0e-09 67.4 249 28.9
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 3.4e-09 66.6 243 27.2
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 4.4e-09 66.2 69 53.6
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 4.4e-09 66.2 213 30.5
Atru.chr13.2367 Acer truncatum HOM05D003774 ORTHO05D009174 9.9e-09 65.1 241 26.1
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 9.9e-09 65.1 246 26.8
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 1.7e-08 64.3 223 25.6
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 2.2e-08 63.9 180 27.2
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 6.4e-08 62.4 243 27.2
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 8.4e-08 62.0 233 28.3
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 1.4e-07 61.2 199 30.7
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 1.9e-07 60.8 200 26.5
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 1.9e-07 60.8 200 26.5
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 3.2e-07 60.1 28 96.4
Lsat_1_v5_gn_1_25820 Lactuca sativa HOM05D003774 ORTHO05D009174 7.1e-07 58.9 199 29.6
Ciclev10030258m.g Citrus clementina HOM05D004677 ORTHO05D005746 1.2e-06 58.2 37 73.0
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 1.2e-06 58.2 200 26.0
Prupe.1G555600 Prunus persica HOM05D003774 ORTHO05D009174 2.1e-06 57.4 232 27.2
RcHm_v2.0_Chr7g0227151 Rosa chinensis HOM05D003774 ORTHO05D009174 2.1e-06 57.4 232 27.6


User provided reference genes

Program Settings