Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 0.0e+00 1327.8 668 100.0
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 0.0e+00 1156.0 666 86.8
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 0.0e+00 1137.5 666 85.0
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 0.0e+00 1135.9 666 85.3
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 0.0e+00 1119.4 669 85.2
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 2.9e-256 888.6 660 66.7
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 3.2e-255 885.2 660 66.8
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 3.9e-253 878.2 658 66.3
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 6.2e-251 870.9 658 66.0
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 2.4e-250 869.0 671 66.0
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 2.0e-249 865.9 663 65.6
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 2.9e-248 862.1 643 66.1
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 8.4e-248 860.5 665 64.7
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 3.2e-247 858.6 640 66.1
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 3.9e-245 851.7 665 66.0
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 1.5e-244 849.7 651 65.1
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.9e-244 849.4 675 63.3
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 7.3e-244 847.4 665 65.9
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 7.3e-244 847.4 665 65.7
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 7.3e-244 847.4 675 63.1
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 8.1e-243 844.0 669 64.1
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 1.1e-242 843.6 669 64.6
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 1.7e-240 836.3 662 63.4
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 1.4e-239 833.2 655 64.4
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 4.2e-239 831.6 675 62.2
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 9.3e-239 830.5 670 63.9
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 3.5e-238 828.6 666 64.0
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 4.6e-238 828.2 662 63.6
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 2.5e-236 822.4 666 63.1
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 4.3e-236 821.6 637 63.4
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 7.4e-236 820.8 659 64.0
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 1.6e-235 819.7 638 64.1
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 1.6e-235 819.7 665 62.9
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 1.8e-234 816.2 664 62.0
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 1.2e-233 813.5 663 62.0
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 2.6e-233 812.4 640 64.5
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 4.5e-233 811.6 659 62.1
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 7.6e-233 810.8 661 62.0
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 7.6e-233 810.8 686 61.5
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 1.7e-232 809.7 638 62.9
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 4.9e-232 808.1 665 61.5
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 4.9e-232 808.1 643 63.1
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 4.9e-232 808.1 664 61.7
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 1.4e-231 806.6 664 61.3
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 3.2e-231 805.4 662 61.2
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 5.5e-231 804.7 670 60.6
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 7.9e-230 800.8 668 61.7
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 1.3e-229 800.0 639 62.8
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 1.3e-229 800.0 663 62.3
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 5.1e-229 798.1 684 59.6
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 8.7e-229 797.3 636 62.1
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 1.1e-228 797.0 661 60.7
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.5e-228 796.6 644 62.4
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 3.3e-228 795.4 601 63.9
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 3.3e-228 795.4 639 62.1
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 1.3e-227 793.5 662 60.4
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 2.8e-227 792.3 669 60.1
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 3.7e-227 792.0 636 61.8
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 4.8e-227 791.6 668 59.6
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 6.2e-227 791.2 658 60.9
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 4.0e-226 788.5 667 60.4
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 1.5e-225 786.6 665 61.2
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.3e-224 783.5 668 61.2
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 1.7e-224 783.1 662 60.6
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 4.9e-224 781.6 667 60.4
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 6.5e-224 781.2 667 60.3
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 8.4e-224 780.8 667 60.6
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 3.2e-223 778.9 667 60.7
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 3.2e-223 778.9 596 65.9
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 7.1e-223 777.7 659 61.3
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 4.6e-222 775.0 665 59.8
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 7.4e-220 767.7 668 59.9
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 2.2e-219 766.1 663 59.3
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 2.2e-219 766.1 660 59.5
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 3.7e-219 765.4 661 59.9
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 6.3e-219 764.6 667 59.8
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 8.2e-219 764.2 661 59.8
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 1.4e-218 763.5 661 59.8
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 1.4e-218 763.5 582 66.0
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 1.8e-218 763.1 659 60.2
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 2.4e-218 762.7 645 60.8
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 5.3e-218 761.5 662 59.7
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 2.0e-217 759.6 668 59.1
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 2.0e-217 759.6 666 60.1
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 4.5e-217 758.4 667 58.5
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 1.3e-216 756.9 666 58.7
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 2.2e-216 756.1 638 60.5
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 3.8e-216 755.4 611 61.5
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 4.2e-215 751.9 581 65.7
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 1.5e-212 743.4 617 60.9
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 1.3e-211 740.3 667 57.7
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 5.3e-210 734.9 667 57.9
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 2.0e-209 733.0 663 58.1
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 1.3e-208 730.3 583 64.0
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 3.6e-206 722.2 651 58.4
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 1.3e-203 713.8 643 57.2
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 7.0e-202 708.0 648 55.9
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 6.5e-200 701.4 680 54.3
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 3.6e-198 695.7 621 57.0
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 2.6e-193 679.5 566 59.5
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 1.2e-177 627.5 547 57.4
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 4.1e-170 602.4 563 54.5
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 1.8e-165 587.0 494 58.7
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 8.3e-155 551.6 689 44.7
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 1.9e-151 540.4 503 55.7
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.7e-144 517.3 600 47.7
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 3.1e-141 506.5 582 49.5
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 4.8e-134 482.6 429 55.5
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 2.3e-128 463.8 527 47.4
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 5.1e-128 462.6 673 41.9
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 4.3e-119 433.0 656 39.8
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 1.4e-117 427.9 847 34.4
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 9.3e-114 415.2 390 60.3
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 7.9e-105 385.6 393 50.6
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 3.8e-99 366.7 516 39.9
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 4.8e-94 349.7 402 54.2
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 3.8e-91 340.1 205 75.6
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 7.0e-77 292.7 280 55.4
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 8.8e-72 275.8 324 46.3
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 8.3e-70 269.2 217 62.7
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 3.7e-62 243.8 213 56.8
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 1.1e-61 242.3 226 54.4
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 2.4e-61 241.1 648 29.6
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 2.5e-58 231.1 693 31.2
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.3e-54 218.8 658 28.1
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 2.7e-52 211.1 626 29.1
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 2.0e-44 184.9 172 58.1
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.3e-43 181.4 277 41.2
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.0e-43 181.0 277 40.8
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 6.6e-43 179.9 145 69.0
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 1.5e-42 178.7 118 72.9
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 8.9e-40 169.5 145 55.9
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 1.6e-33 148.7 140 56.4
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.0e-31 141.7 277 34.7
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 5.8e-31 140.2 113 61.1
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 7.6e-31 139.8 169 48.5
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 5.4e-29 133.7 180 39.4
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 4.6e-28 130.6 239 36.4
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.3e-27 129.0 239 36.0
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.3e-27 129.0 239 36.0
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.3e-27 129.0 239 36.0
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.3e-27 129.0 239 36.0
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 2.4e-24 118.2 109 62.4
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 3.4e-23 114.4 168 41.7
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 5.8e-23 113.6 168 41.7
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 1.3e-22 112.5 173 42.2
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.9e-22 111.3 168 41.1
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 6.4e-22 110.2 168 40.5
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 1.8e-16 92.0 62 77.4
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 3.1e-16 91.3 118 44.1
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 1.5e-15 89.0 62 75.8
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 1.3e-09 69.3 49 65.3
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 2.1e-09 68.6 40 72.5
Lsat_1_v5_gn_5_150541 Lactuca sativa HOM05D005051 ORTHO05D048368 1.2e-07 62.8 49 59.2
Lsat_1_v5_gn_5_28021 Lactuca sativa HOM05D001978 ORTHO05D048368 1.2e-07 62.8 49 59.2


User provided reference genes

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