Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 9.2e-72 273.5 140 100.0
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 2.3e-59 232.3 132 85.6
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 8.6e-54 213.8 134 80.6
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 9.5e-53 210.3 132 80.3
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 4.2e-40 168.3 133 64.7
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 3.5e-39 165.2 133 63.2
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 1.5e-37 159.8 131 64.1
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.9e-37 159.5 131 61.8
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.3e-37 158.3 131 61.1
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 4.3e-37 158.3 131 61.1
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 4.3e-37 158.3 126 61.1
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 3.6e-36 155.2 128 64.1
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 4.0e-35 151.8 127 59.8
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 5.3e-35 151.4 133 57.1
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 2.0e-34 149.4 130 59.2
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 2.0e-34 149.4 133 58.6
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 4.5e-34 148.3 144 55.6
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 5.8e-34 147.9 133 55.6
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 5.8e-34 147.9 133 55.6
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 9.9e-34 147.1 133 54.9
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.3e-33 146.7 133 54.9
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 1.3e-33 146.7 133 55.6
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 1.7e-33 146.4 128 60.2
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 1.7e-33 146.4 128 61.7
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.8e-33 145.2 133 54.9
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 1.1e-32 143.7 141 56.7
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 4.2e-32 141.7 123 58.5
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 4.2e-32 141.7 123 57.7
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 4.2e-32 141.7 132 56.8
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.4e-32 141.4 141 55.3
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.4e-32 141.4 141 53.9
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 7.1e-32 141.0 143 53.1
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 7.1e-32 141.0 141 53.9
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 2.1e-31 139.4 127 59.8
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 3.5e-31 138.7 133 52.6
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 1.0e-30 137.1 125 57.6
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.3e-30 136.7 119 59.7
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.8e-30 136.3 133 56.4
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.3e-30 136.0 134 59.0
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 3.9e-30 135.2 125 56.8
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 3.9e-30 135.2 124 59.7
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 6.7e-30 134.4 132 56.8
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 1.5e-29 133.3 141 53.2
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 2.5e-29 132.5 134 56.0
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 3.3e-29 132.1 133 54.1
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 5.6e-29 131.3 123 55.3
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 7.4e-29 131.0 128 53.1
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 1.3e-28 130.2 128 57.0
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 2.1e-28 129.4 130 51.5
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 6.2e-28 127.9 134 52.2
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 5.3e-27 124.8 128 51.6
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 1.5e-26 123.2 129 50.4
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 1.5e-26 123.2 128 51.6
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 2.6e-26 122.5 129 51.2
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 3.4e-26 122.1 146 48.6
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.5e-26 121.7 134 54.5
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 4.5e-26 121.7 146 47.9
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 7.6e-26 120.9 129 46.5
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 7.6e-26 120.9 123 53.7
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 1.3e-25 120.2 134 53.7
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 1.3e-25 120.2 123 48.8
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 2.2e-25 119.4 133 54.9
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 2.2e-25 119.4 114 54.4
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 6.4e-25 117.9 124 52.4
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 1.9e-24 116.3 133 44.4
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 1.9e-24 116.3 125 50.4
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 4.2e-24 115.2 130 50.0
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 5.5e-24 114.8 136 50.0
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 7.1e-24 114.4 130 53.1
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 2.1e-23 112.8 135 50.4
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 2.1e-23 112.8 134 45.5
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 2.7e-23 112.5 124 50.8
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 3.5e-23 112.1 145 49.0
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 4.6e-23 111.7 129 48.8
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 4.6e-23 111.7 95 57.9
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 7.9e-23 110.9 124 49.2
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.3e-22 109.4 91 59.3
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 3.0e-22 109.0 129 48.1
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 3.0e-22 109.0 110 50.0
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 5.1e-22 108.2 135 48.9
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 6.7e-22 107.8 126 50.8
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 8.7e-22 107.5 115 50.4
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 3.3e-21 105.5 128 42.2
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 5.6e-21 104.8 132 48.5
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 1.3e-20 103.6 126 44.4
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 2.8e-20 102.4 120 52.5
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 4.8e-20 101.7 109 49.5
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 4.8e-20 101.7 106 53.8
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 4.8e-20 101.7 133 45.1
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 6.2e-20 101.3 115 48.7
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 6.2e-20 101.3 115 48.7
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 8.1e-20 100.9 115 49.6
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 1.1e-19 100.5 116 48.3
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 2.4e-19 99.4 115 47.0
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 2.4e-19 99.4 115 47.0
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 2.4e-19 99.4 109 48.6
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 3.1e-19 99.0 115 47.8
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 3.1e-19 99.0 115 47.8
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 3.1e-19 99.0 118 50.0
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 4.0e-19 98.6 115 47.0
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 4.0e-19 98.6 145 41.4
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 5.3e-19 98.2 115 48.7
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 5.3e-19 98.2 137 42.3
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 6.9e-19 97.8 115 47.8
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 6.9e-19 97.8 130 46.2
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 9.0e-19 97.4 120 48.3
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 9.0e-19 97.4 137 41.6
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.5e-18 96.7 138 44.2
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 3.4e-18 95.5 115 46.1
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 5.8e-18 94.7 104 50.0
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 7.6e-18 94.4 121 42.1
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.0e-17 94.0 114 49.1
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.3e-17 93.6 118 50.0
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.7e-17 93.2 125 46.4
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.2e-17 92.8 117 45.3
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 9.3e-16 87.4 125 44.0
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 4.6e-15 85.1 111 44.1
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 1.3e-14 83.6 139 39.6
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 1.8e-14 83.2 125 42.4
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.0e-14 82.4 101 52.5
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 8.7e-14 80.9 116 44.0
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 3.3e-13 79.0 92 51.1
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 1.3e-12 77.0 150 37.3
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.8e-12 75.9 135 40.0
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 6.3e-12 74.7 143 35.7
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 6.3e-12 74.7 143 35.7
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 1.4e-11 73.6 111 42.3
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 3.1e-11 72.4 131 33.6
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 4.1e-11 72.0 133 36.8
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 1.2e-10 70.5 138 36.2
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 2.0e-10 69.7 136 37.5
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 3.4e-10 68.9 137 36.5
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 3.4e-10 68.9 113 40.7
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 7.6e-10 67.8 148 34.5
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 1.0e-09 67.4 140 35.0
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 1.7e-09 66.6 129 32.6
BcaC04g19726 Brassica carinata HOM05D010860 ORTHO05D005733 1.7e-09 66.6 140 35.0
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 2.2e-09 66.2 140 33.6
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 2.9e-09 65.9 153 33.3
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 8.5e-09 64.3 115 40.0
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 1.1e-08 63.9 139 32.4
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 1.4e-08 63.5 134 35.1
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 1.4e-08 63.5 102 41.2
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 2.7e-07 59.3 108 38.9
Oeu001270.1 Olea europaea HOM05D005728 ORTHO05D005733 2.7e-07 59.3 109 43.1


User provided reference genes

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