Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 4.2e-43 177.6 85 100.0
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 5.6e-24 114.0 87 63.2
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.0e-20 103.2 90 57.8
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 3.8e-20 101.3 93 58.1
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 3.2e-19 98.2 91 61.5
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 4.1e-14 81.3 67 56.7
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 2.2e-12 75.5 67 52.2
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 2.2e-12 75.5 85 49.4
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.9e-12 75.1 79 45.6
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.9e-12 75.1 84 46.4
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 3.8e-12 74.7 46 73.9
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 5.0e-12 74.3 40 77.5
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 6.5e-12 73.9 59 55.9
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.9e-11 72.4 55 58.2
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 2.5e-11 72.0 45 71.1
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 3.2e-11 71.6 53 64.2
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 3.2e-11 71.6 64 54.7
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 4.2e-11 71.2 45 68.9
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 4.2e-11 71.2 72 48.6
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 5.5e-11 70.9 53 64.2
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 5.5e-11 70.9 68 50.0
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 7.2e-11 70.5 42 71.4
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 7.2e-11 70.5 42 71.4
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 7.2e-11 70.5 72 54.2
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 9.4e-11 70.1 68 51.5
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 9.4e-11 70.1 49 63.3
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 9.4e-11 70.1 56 58.9
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 9.4e-11 70.1 40 77.5
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 1.2e-10 69.7 53 64.2
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 1.6e-10 69.3 35 80.0
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 1.6e-10 69.3 56 58.9
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 1.6e-10 69.3 36 80.6
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 1.6e-10 69.3 34 85.3
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 2.1e-10 68.9 53 60.4
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 2.1e-10 68.9 53 60.4
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 2.1e-10 68.9 53 60.4
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 2.7e-10 68.6 40 72.5
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 3.6e-10 68.2 46 67.4
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.6e-10 68.2 40 72.5
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 4.6e-10 67.8 40 72.5
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 4.6e-10 67.8 40 72.5
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 4.6e-10 67.8 40 72.5
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 4.6e-10 67.8 40 72.5
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 4.6e-10 67.8 40 72.5
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 4.6e-10 67.8 40 72.5
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 4.6e-10 67.8 34 82.4
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 4.6e-10 67.8 58 53.4
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.1e-10 67.4 33 84.8
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.1e-10 67.4 33 84.8
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 6.1e-10 67.4 33 84.8
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 6.1e-10 67.4 34 79.4
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 6.1e-10 67.4 39 74.4
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 7.9e-10 67.0 53 58.5
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 7.9e-10 67.0 34 79.4
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 7.9e-10 67.0 32 87.5
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 1.0e-09 66.6 44 63.6
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.0e-09 66.6 40 72.5
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.0e-09 66.6 40 72.5
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 1.0e-09 66.6 59 54.2
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 1.4e-09 66.2 32 87.5
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 1.4e-09 66.2 51 60.8
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.4e-09 66.2 66 48.5
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 1.8e-09 65.9 34 76.5
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 2.3e-09 65.5 32 84.4
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.3e-09 65.5 33 78.8
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 2.3e-09 65.5 34 79.4
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 3.0e-09 65.1 34 79.4
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.0e-09 65.1 33 78.8
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.0e-09 65.1 33 78.8
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 3.0e-09 65.1 34 73.5
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 3.0e-09 65.1 43 62.8
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 3.0e-09 65.1 43 62.8
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 3.9e-09 64.7 33 75.8
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 3.9e-09 64.7 33 75.8
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 3.9e-09 64.7 37 67.6
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 3.9e-09 64.7 42 61.9
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 5.1e-09 64.3 33 72.7
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 5.1e-09 64.3 60 48.3
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 6.7e-09 63.9 34 79.4
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 6.7e-09 63.9 53 56.6
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 1.1e-08 63.2 35 71.4
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.5e-08 62.8 82 39.0
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.9e-08 62.4 31 80.6
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.9e-08 62.4 31 83.9
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.9e-08 62.4 32 78.1
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.9e-08 62.4 34 73.5
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.9e-08 62.4 34 73.5
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.9e-08 62.4 34 73.5
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.9e-08 62.4 34 73.5
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 2.5e-08 62.0 52 53.8
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 2.5e-08 62.0 39 61.5
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.5e-08 62.0 43 58.1
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 2.5e-08 62.0 43 58.1
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.5e-08 62.0 43 62.8
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 3.3e-08 61.6 40 60.0
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 3.3e-08 61.6 44 59.1
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 4.3e-08 61.2 31 80.6
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 4.3e-08 61.2 37 67.6
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 5.7e-08 60.8 33 72.7
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 7.4e-08 60.5 35 68.6
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 7.4e-08 60.5 30 86.7
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 7.4e-08 60.5 30 86.7
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 7.4e-08 60.5 30 86.7
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 7.4e-08 60.5 32 75.0
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 7.4e-08 60.5 32 75.0
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 9.7e-08 60.1 30 83.3
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 9.7e-08 60.1 53 54.7
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 9.7e-08 60.1 42 59.5
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 9.7e-08 60.1 32 75.0
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 1.3e-07 59.7 30 83.3
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.3e-07 59.7 30 83.3
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 1.3e-07 59.7 37 67.6
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.3e-07 59.7 47 55.3
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.3e-07 59.7 49 55.1
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 1.3e-07 59.7 31 80.6
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 1.7e-07 59.3 33 69.7
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.2e-07 58.9 59 50.8
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.8e-07 58.5 30 83.3
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 2.8e-07 58.5 30 83.3
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 2.8e-07 58.5 40 62.5
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.8e-07 58.5 57 47.4
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.8e-07 58.5 57 47.4
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 3.7e-07 58.2 30 80.0
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 3.7e-07 58.2 30 80.0
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 3.7e-07 58.2 59 45.8
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 3.7e-07 58.2 54 55.6
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 4.8e-07 57.8 57 49.1
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 4.8e-07 57.8 32 71.9
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 6.3e-07 57.4 30 76.7
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 6.3e-07 57.4 32 68.8
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 6.3e-07 57.4 32 71.9
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 6.3e-07 57.4 31 74.2
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 8.2e-07 57.0 30 76.7
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 8.2e-07 57.0 40 60.0
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 8.2e-07 57.0 30 76.7
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 8.2e-07 57.0 34 67.6
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 1.1e-06 56.6 43 55.8
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 1.1e-06 56.6 30 76.7
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.4e-06 56.2 37 62.2
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.4e-06 56.2 29 79.3
Peaxi162Scf00071g01115 Petunia axillaris HOM05D003654 ORTHO05D004176 1.4e-06 56.2 40 60.0
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 1.4e-06 56.2 53 49.1
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 1.4e-06 56.2 29 75.9
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 1.8e-06 55.8 56 48.2
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.8e-06 55.8 30 76.7
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.8e-06 55.8 59 50.8
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.8e-06 55.8 29 72.4
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 1.8e-06 55.8 44 56.8
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 2.4e-06 55.5 30 76.7
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 2.4e-06 55.5 69 44.9
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 2.4e-06 55.5 30 73.3
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 3.1e-06 55.1 56 48.2
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 5.3e-06 54.3 30 73.3
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 5.3e-06 54.3 30 73.3
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 5.3e-06 54.3 30 76.7
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 5.3e-06 54.3 30 76.7
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 5.3e-06 54.3 30 76.7
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 6.9e-06 53.9 42 54.8
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 9.1e-06 53.5 30 70.0
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 9.1e-06 53.5 37 62.2


User provided reference genes

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