Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 0.0e+00 2518.0 1277 100.0
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 2073.9 1276 81.2
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 0.0e+00 1777.7 1110 79.7
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1368.2 1307 55.5
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1364.0 1309 55.8
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1340.9 1301 54.9
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1338.6 1286 55.4
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1329.7 1296 54.3
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1319.3 1298 54.4
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1300.4 1315 52.7
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1297.3 1297 53.5
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1292.3 1284 53.7
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1290.4 1294 53.2
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1288.9 1421 50.2
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1288.1 1317 53.5
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 0.0e+00 1264.6 789 79.1
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1250.3 1285 51.8
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1234.9 1278 52.2
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1231.5 1292 51.8
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1227.2 1161 55.7
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1226.8 1298 50.8
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1222.6 1286 50.5
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1221.1 1281 50.8
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1209.1 1295 50.2
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1206.4 1282 50.4
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1203.0 1272 51.2
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1203.0 1267 51.1
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1190.3 1298 48.8
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1187.6 1314 48.6
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1173.3 1283 49.1
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 0.0e+00 1165.6 1157 53.6
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 0.0e+00 1162.5 1297 49.1
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1157.9 1288 47.9
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1156.4 1298 47.8
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 0.0e+00 1155.6 1284 47.4
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1148.7 1305 48.3
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1147.1 1303 48.0
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 0.0e+00 1146.7 1274 46.9
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 0.0e+00 1141.3 1302 48.2
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 0.0e+00 1140.6 1324 47.7
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 0.0e+00 1137.9 1117 54.1
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 0.0e+00 1133.6 1306 47.5
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 0.0e+00 1133.2 1303 46.0
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1123.6 1295 47.8
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1118.6 1288 47.4
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1118.6 1309 46.9
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 0.0e+00 1117.8 1315 47.5
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 0.0e+00 1112.8 1275 46.9
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 0.0e+00 1101.3 1282 47.0
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 0.0e+00 1100.5 1286 46.3
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 0.0e+00 1098.6 1273 46.5
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1098.2 1262 46.0
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 0.0e+00 1094.3 1308 45.5
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1094.0 1275 45.5
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 0.0e+00 1094.0 1275 45.5
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1090.5 1315 46.3
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1088.6 1260 45.7
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 0.0e+00 1087.4 1300 45.9
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 0.0e+00 1087.0 1302 47.2
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1085.5 1280 45.9
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1075.5 1301 46.3
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 8.7e-312 1074.7 1151 50.0
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 1.5e-309 1066.6 1299 46.2
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 1.2e-308 1063.5 1273 45.9
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 6.4e-305 1051.2 1355 44.1
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 6.0e-303 1044.6 1022 53.6
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 7.8e-303 1044.3 1039 52.8
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 1.7e-302 1043.1 1304 44.6
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 5.1e-302 1041.6 1280 44.8
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 1.6e-300 1036.6 1264 44.8
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 7.8e-295 1017.7 1127 49.6
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.9e-293 1013.1 1291 43.5
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 1.3e-292 1010.4 1292 44.0
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 6.9e-291 1004.6 1190 47.1
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 9.0e-291 1004.2 1286 43.2
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 3.2e-288 995.7 1286 42.9
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 7.9e-287 991.1 1263 44.0
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 9.0e-283 977.6 1275 42.0
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 1.9e-280 969.9 916 55.8
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 1.3e-278 963.8 1287 42.0
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 2.3e-278 963.0 1157 46.2
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 4.6e-271 938.7 1207 43.7
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 1.9e-269 933.3 1246 42.5
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 1.6e-268 930.2 1283 42.9
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 2.4e-251 873.2 860 54.2
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.4e-246 857.4 995 45.9
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 1.9e-240 837.0 1110 41.4
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 3.2e-240 836.3 1198 40.2
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 6.8e-230 802.0 1014 45.4
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 8.3e-228 795.0 1149 39.7
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 8.6e-225 785.0 759 54.7
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 3.5e-210 736.5 841 47.2
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 1.6e-202 711.1 1010 37.7
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 2.6e-189 667.2 1269 33.1
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 9.9e-189 665.2 769 47.7
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 3.8e-180 636.7 1034 36.6
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 1.8e-174 617.8 663 48.9
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 1.2e-149 535.4 723 44.0
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 5.9e-149 533.1 588 48.6
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 2.7e-146 524.2 649 46.5
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 8.2e-143 512.7 465 57.8
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 1.5e-136 491.9 627 43.4
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 1.4e-134 485.3 495 52.9
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 3.1e-110 404.4 1308 26.9
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 1.5e-107 395.6 405 54.1
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 4.7e-106 390.6 478 47.3
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 2.7e-101 374.8 1270 25.0
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 3.3e-91 341.3 483 39.5
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 5.2e-81 307.4 606 35.6
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 6.0e-77 293.9 361 44.3
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.3e-76 292.7 385 40.3
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.0e-72 278.9 376 40.7
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 2.3e-68 265.4 384 40.4
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.5e-43 183.0 273 41.4
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 3.5e-37 161.8 170 49.4
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 5.7e-35 154.5 187 44.9
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 6.3e-34 151.0 318 34.9
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 7.9e-29 134.0 138 52.9
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 5.3e-25 121.3 111 58.6
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 1.0e-23 117.1 137 43.8
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 1.7e-23 116.3 108 52.8
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 5.0e-23 114.8 132 43.2
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 1.4e-22 113.2 150 42.7
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 7.9e-21 107.5 130 50.0
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 3.7e-18 98.6 185 30.8
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 4.1e-17 95.1 437 22.4
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 9.1e-17 94.0 116 47.4
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 4.2e-14 85.1 65 60.0
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 2.7e-13 82.4 117 40.2
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 6.7e-12 77.8 59 66.1
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 1.5e-11 76.6 170 32.9
Pp3c5_2370 Physcomitrium patens HOM05D005651 ORTHO05D006877 3.3e-11 75.5 295 23.7


User provided reference genes

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