Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.3e-196 689.5 337 100.0
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 2.7e-162 575.5 361 80.6
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 6.3e-159 564.3 360 78.3
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 1.9e-155 552.7 360 76.4
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 3.9e-153 545.0 360 75.0
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.6e-130 468.8 356 66.6
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 7.5e-128 461.1 356 65.7
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 7.5e-128 461.1 362 63.8
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 9.1e-126 454.1 353 64.0
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 9.1e-126 454.1 354 65.3
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 9.1e-126 454.1 357 65.3
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 2.7e-125 452.6 353 64.3
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 4.5e-125 451.8 357 65.0
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 2.2e-124 449.5 364 62.1
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 2.9e-124 449.1 356 64.0
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 5.0e-124 448.4 353 64.9
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 1.9e-123 446.4 353 64.3
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 2.5e-123 446.0 362 62.7
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 9.4e-123 444.1 353 63.5
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 2.7e-122 442.6 355 64.8
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 8.0e-122 441.0 364 64.0
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 8.0e-122 441.0 354 61.3
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 1.4e-121 440.3 356 64.3
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 3.0e-121 439.1 371 60.9
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 3.4e-120 435.6 329 65.0
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 3.4e-120 435.6 352 63.1
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 7.5e-120 434.5 355 62.0
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 9.8e-120 434.1 355 62.0
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 2.2e-119 433.0 352 62.2
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 1.1e-118 430.6 353 62.3
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 1.4e-118 430.3 353 61.8
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.4e-118 429.5 363 60.9
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.4e-118 429.5 363 60.9
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 3.1e-118 429.1 354 62.1
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 3.1e-118 429.1 354 60.2
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 4.1e-118 428.7 352 61.9
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 7.0e-118 427.9 374 59.6
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 9.1e-118 427.6 352 61.9
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 1.6e-117 426.8 357 60.5
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 1.6e-117 426.8 379 58.8
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.7e-117 426.0 362 60.5
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 3.5e-117 425.6 350 61.7
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 3.5e-117 425.6 354 61.3
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 6.6e-116 421.4 375 59.5
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 1.1e-115 420.6 354 61.3
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.5e-115 420.2 355 61.4
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 1.9e-115 419.9 357 61.9
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.9e-115 419.9 331 62.8
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.5e-115 419.5 363 59.8
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 3.3e-115 419.1 363 59.5
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 3.3e-115 419.1 363 59.8
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 4.2e-115 418.7 354 59.0
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 9.5e-115 417.5 354 59.9
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.2e-114 417.2 354 59.6
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.2e-114 417.2 329 62.9
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 2.8e-114 416.0 353 58.4
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.8e-114 416.0 352 59.4
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.6e-114 415.6 352 59.1
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.3e-113 412.9 354 59.6
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 2.3e-113 412.9 353 58.1
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 4.0e-113 412.1 347 61.7
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 6.8e-113 411.4 362 58.0
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 6.8e-113 411.4 333 61.6
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.2e-112 410.6 352 59.1
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 1.5e-112 410.2 333 62.5
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 2.6e-112 409.5 360 57.2
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 4.4e-112 408.7 362 57.2
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 7.5e-112 407.9 364 56.9
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.8e-110 403.3 358 57.0
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 7.0e-110 401.4 354 58.2
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 1.2e-109 400.6 354 59.0
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.2e-109 400.6 358 57.0
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 1.6e-109 400.2 356 57.3
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 2.0e-109 399.8 362 57.2
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 2.0e-109 399.8 354 60.2
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 2.7e-109 399.4 362 57.2
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 3.5e-109 399.1 362 58.0
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 5.9e-109 398.3 354 58.2
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 1.3e-108 397.1 354 60.2
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.3e-108 397.1 377 56.0
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 5.0e-108 395.2 354 58.5
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 6.6e-108 394.8 354 59.6
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 8.6e-108 394.4 354 57.6
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.1e-107 394.0 358 56.1
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.9e-107 393.3 358 58.1
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 3.3e-107 392.5 356 59.8
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 4.3e-107 392.1 354 60.2
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 5.6e-107 391.7 354 57.6
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 1.6e-106 390.2 354 59.0
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 2.8e-106 389.4 375 54.9
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 4.7e-106 388.7 354 58.8
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 1.4e-105 387.1 354 56.8
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 2.3e-105 386.3 351 59.0
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 2.3e-105 386.3 362 54.7
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 3.1e-105 386.0 354 59.0
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 3.1e-105 386.0 354 59.0
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 4.0e-105 385.6 355 56.6
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 8.9e-105 384.4 371 55.0
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 1.3e-103 380.6 354 58.2
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 1.7e-103 380.2 346 59.0
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 2.2e-103 379.8 352 56.8
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 3.7e-103 379.0 346 58.7
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 4.9e-103 378.6 332 61.1
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 4.9e-103 378.6 363 55.1
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 2.4e-102 376.3 356 55.3
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 4.1e-102 375.6 346 57.8
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 7.0e-102 374.8 367 55.9
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 2.3e-100 369.8 328 57.3
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 3.3e-99 365.9 326 58.9
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 3.3e-99 365.9 363 55.4
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.3e-99 365.5 354 56.2
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 3.6e-98 362.5 373 51.7
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 4.7e-98 362.1 351 57.3
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 8.1e-98 361.3 355 53.5
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 7.5e-96 354.8 355 52.1
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 2.2e-95 353.2 335 54.3
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 6.4e-95 351.7 354 55.4
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.4e-94 349.7 381 51.4
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 2.4e-94 349.7 354 53.7
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 1.2e-93 347.4 345 55.1
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 3.5e-93 345.9 343 54.8
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 4.6e-93 345.5 291 60.8
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 4.0e-89 332.4 369 50.9
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 9.9e-88 327.8 355 49.3
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.2e-87 326.6 338 52.4
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 6.4e-87 325.1 525 39.0
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.4e-86 323.2 230 65.7
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.2e-85 320.9 334 53.6
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 3.5e-85 319.3 428 43.7
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 4.6e-85 318.9 439 44.2
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.1e-81 307.8 371 48.2
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.4e-81 307.4 421 43.7
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.7e-79 300.4 318 52.8
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 3.2e-78 296.2 244 58.2
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 5.4e-70 268.9 361 43.5
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 7.1e-70 268.5 171 72.5
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 1.0e-68 264.6 241 53.5
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 1.9e-67 260.4 336 44.9
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 2.1e-66 256.9 351 40.5
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.1e-57 228.0 344 41.3
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 5.8e-56 222.2 351 38.5
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 3.8e-55 219.5 327 39.4
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 1.9e-51 207.2 210 47.6
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 9.0e-49 198.4 307 40.4
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 1.3e-47 194.5 259 46.3
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 1.3e-47 194.5 259 46.3
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 5.0e-47 192.6 198 53.5
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 5.7e-43 179.1 128 60.2
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.6e-42 177.6 224 50.4
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 2.6e-40 170.2 228 50.9
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 8.8e-36 155.2 100 68.0
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.1e-35 154.8 335 33.7
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.0e-35 154.1 226 46.5
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.0e-31 141.7 347 34.0
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.2e-31 140.6 115 58.3
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 5.7e-27 125.9 135 56.3
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 2.4e-25 120.6 168 46.4
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 5.3e-25 119.4 72 68.1
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 1.9e-14 84.3 52 78.8
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 9.4e-14 82.0 63 61.9
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 2.7e-08 63.9 33 75.8


User provided reference genes

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