Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 2.3e-125 452.2 226 100.0
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 1.9e-98 362.8 226 77.4
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 1.4e-90 336.7 227 72.2
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 1.7e-83 313.2 230 71.3
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 1.9e-82 309.7 230 70.9
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.4e-74 282.7 222 61.3
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.5e-71 273.5 222 60.8
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 9.6e-71 270.8 227 59.0
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 2.8e-70 269.2 225 57.3
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 3.6e-70 268.9 254 53.1
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 3.1e-69 265.8 228 57.5
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 6.9e-69 264.6 186 64.5
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 4.5e-68 261.9 220 59.1
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 4.5e-68 261.9 229 56.3
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 9.9e-68 260.8 219 56.6
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 9.9e-68 260.8 227 57.3
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 2.9e-67 259.2 227 62.1
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 1.1e-66 257.3 208 60.6
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 1.9e-66 256.5 221 57.9
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 2.4e-66 256.1 220 57.7
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 3.2e-66 255.8 231 56.7
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 4.2e-66 255.4 213 59.2
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 3.5e-65 252.3 222 57.2
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 7.9e-65 251.1 226 54.9
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 7.9e-65 251.1 219 55.7
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 7.9e-65 251.1 222 55.4
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 7.9e-65 251.1 219 55.3
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 1.0e-64 250.8 223 58.3
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.3e-64 250.4 226 61.1
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 1.8e-64 250.0 218 56.0
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 6.7e-64 248.1 196 58.2
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 8.7e-64 247.7 227 55.5
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 8.7e-64 247.7 227 59.0
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 8.7e-64 247.7 190 60.0
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 1.5e-63 246.9 237 53.2
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 5.6e-63 245.0 228 54.8
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 7.4e-63 244.6 227 53.3
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 2.8e-62 242.7 217 53.9
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 3.7e-62 242.3 201 59.2
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 4.8e-62 241.9 190 57.4
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 4.8e-62 241.9 227 58.6
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 4.8e-62 241.9 227 58.6
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.8e-62 241.9 222 54.1
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 8.1e-62 241.1 229 55.9
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 1.1e-61 240.7 225 53.8
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 1.4e-61 240.4 198 58.1
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.4e-61 240.4 216 54.2
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 4.0e-61 238.8 227 57.7
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 5.3e-61 238.4 207 55.1
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 9.0e-61 237.7 216 51.4
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 1.2e-60 237.3 216 52.8
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 1.5e-60 236.9 224 53.6
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 1.5e-60 236.9 262 48.9
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 2.0e-60 236.5 214 53.3
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 2.0e-60 236.5 204 54.4
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 2.6e-60 236.1 212 51.9
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 2.6e-60 236.1 204 53.9
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 5.8e-60 235.0 226 52.7
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 5.8e-60 235.0 219 53.4
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 7.6e-60 234.6 226 53.5
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 1.7e-59 233.4 190 58.4
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.2e-59 233.0 227 57.7
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 2.9e-59 232.6 195 56.9
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 3.8e-59 232.3 215 54.0
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 3.8e-59 232.3 224 51.8
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 4.9e-59 231.9 227 52.4
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 1.1e-58 230.7 244 49.6
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.4e-58 230.3 193 57.5
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 2.5e-58 229.6 230 55.7
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 4.2e-58 228.8 226 49.1
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 4.2e-58 228.8 195 57.4
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 5.5e-58 228.4 229 55.5
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 7.1e-58 228.0 220 53.2
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 7.1e-58 228.0 225 52.9
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 7.1e-58 228.0 195 57.4
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.6e-57 226.9 214 54.2
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 2.7e-57 226.1 204 54.4
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 6.0e-57 224.9 222 51.8
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 6.0e-57 224.9 224 52.7
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 1.3e-56 223.8 204 53.4
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.3e-56 223.0 219 53.4
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 3.0e-56 222.6 219 51.1
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 3.9e-56 222.2 198 54.5
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 6.7e-56 221.5 214 51.4
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 6.7e-56 221.5 267 43.8
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 8.7e-56 221.1 215 55.3
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 8.7e-56 221.1 217 53.5
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.1e-55 220.7 223 49.8
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 1.5e-55 220.3 214 51.4
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 1.5e-55 220.3 218 51.4
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 2.5e-55 219.5 214 51.4
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 5.7e-55 218.4 214 52.3
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 5.7e-55 218.4 191 55.5
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 7.4e-55 218.0 225 50.2
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 9.6e-55 217.6 222 50.0
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 1.3e-54 217.2 214 51.4
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 1.6e-54 216.9 226 54.4
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 1.6e-54 216.9 226 51.3
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 1.6e-54 216.9 197 51.8
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.1e-54 216.5 197 53.8
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 2.8e-54 216.1 214 50.5
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 3.7e-54 215.7 214 50.9
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 4.8e-54 215.3 230 53.0
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.4e-53 213.8 214 50.9
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 5.3e-53 211.8 202 52.5
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 5.3e-53 211.8 223 50.7
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 9.0e-53 211.1 215 51.2
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 1.2e-52 210.7 195 51.8
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.5e-52 210.3 247 44.9
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.0e-52 209.9 220 47.3
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.0e-52 209.9 198 53.5
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 5.8e-52 208.4 185 53.5
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 7.6e-52 208.0 247 46.2
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 1.7e-51 206.8 190 51.1
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 2.2e-51 206.5 216 49.1
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 2.2e-51 206.5 229 47.6
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 5.0e-51 205.3 229 50.7
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.9e-50 203.4 196 53.1
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 2.7e-49 199.5 162 57.4
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.5e-49 199.1 233 44.6
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 1.8e-48 196.8 214 49.5
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 5.1e-48 195.3 190 50.5
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 1.9e-47 193.4 229 48.5
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 1.9e-47 193.4 229 48.0
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 9.7e-47 191.0 211 45.5
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 4.8e-46 188.7 186 49.5
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 6.3e-46 188.3 227 46.7
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 8.2e-46 188.0 216 44.4
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 1.4e-45 187.2 197 48.7
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 4.1e-45 185.7 234 42.7
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 6.9e-45 184.9 214 48.6
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 2.6e-44 183.0 146 59.6
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.2e-43 179.9 197 47.2
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 3.8e-43 179.1 230 44.3
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 5.0e-43 178.7 232 42.7
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 6.5e-43 178.3 201 52.2
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 8.5e-43 177.9 214 48.6
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 4.2e-42 175.6 209 44.5
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 5.5e-42 175.3 209 42.6
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 7.2e-42 174.9 214 48.1
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 3.6e-41 172.6 197 45.7
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 3.6e-41 172.6 209 43.5
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 3.6e-41 172.6 209 43.5
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 4.6e-41 172.2 200 46.0
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 1.4e-40 170.6 200 45.5
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 8.8e-40 167.9 195 50.8
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 8.8e-40 167.9 120 59.2
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 1.1e-39 167.5 213 41.8
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 1.7e-38 163.7 209 42.6
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 1.2e-36 157.5 141 57.4
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 4.5e-36 155.6 187 41.2
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.3e-35 154.1 208 42.3
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 5.5e-34 148.7 140 52.9
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 2.3e-32 143.3 225 38.7
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 2.6e-31 139.8 162 44.4
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.4e-29 133.3 158 45.6
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 4.5e-28 129.0 269 35.7
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 2.1e-25 120.2 145 44.8
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.8e-24 117.1 181 38.1
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 8.8e-24 114.8 146 43.8
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 8.8e-24 114.8 144 44.4
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.1e-23 114.4 144 43.8
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 3.6e-17 92.8 106 44.3
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 5.7e-15 85.5 159 34.6
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.2e-14 83.6 66 57.6
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.5e-12 76.3 64 57.8
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 1.3e-11 74.3 65 53.8
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 3.8e-11 72.8 72 48.6
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 8.0e-09 65.1 111 36.0
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 8.0e-09 65.1 84 41.7
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 6.8e-08 62.0 55 50.9
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 1.5e-07 60.8 53 52.8
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 2.0e-07 60.5 111 35.1
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 9.8e-07 58.2 73 42.5
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 1.3e-06 57.8 74 45.9
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 1.7e-06 57.4 109 33.0
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 2.8e-06 56.6 82 41.5
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 3.7e-06 56.2 74 39.2
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 4.9e-06 55.8 83 39.8
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 4.9e-06 55.8 57 45.6
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 6.3e-06 55.5 82 40.2
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 6.3e-06 55.5 43 60.5
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 6.3e-06 55.5 37 70.3
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 8.3e-06 55.1 73 50.7


User provided reference genes

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