Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 8.7e-79 297.0 158 100.0
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 4.1e-44 181.8 154 63.0
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 2.7e-43 179.1 159 61.6
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 5.9e-43 177.9 158 63.3
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 1.3e-42 176.8 156 61.5
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 5.5e-41 171.4 156 60.3
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 2.3e-39 166.0 156 56.4
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 6.8e-39 164.5 156 58.3
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.3e-37 160.2 156 54.5
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 2.8e-37 159.1 156 54.5
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 4.9e-37 158.3 156 53.2
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 5.4e-36 154.8 157 56.1
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 9.2e-36 154.1 153 56.2
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 3.5e-35 152.1 156 51.9
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 5.9e-35 151.4 157 54.1
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 1.0e-34 150.6 160 53.1
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 1.3e-34 150.2 157 51.6
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 5.0e-34 148.3 152 53.9
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 6.6e-34 147.9 156 58.3
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 6.6e-34 147.9 156 55.1
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.1e-33 147.1 157 52.9
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.1e-33 147.1 157 52.9
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 1.5e-33 146.7 162 50.6
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 2.5e-33 146.0 149 52.3
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.3e-33 145.6 156 51.9
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.3e-33 145.6 151 54.3
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 4.3e-33 145.2 151 54.3
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 5.6e-33 144.8 151 54.3
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.6e-32 142.1 151 53.6
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 4.7e-32 141.7 155 50.3
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 1.8e-31 139.8 156 52.6
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 1.8e-31 139.8 154 53.9
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 2.3e-31 139.4 158 50.0
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 6.8e-31 137.9 157 49.7
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 6.8e-31 137.9 156 51.3
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 1.2e-30 137.1 161 53.4
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 2.6e-30 136.0 153 49.7
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 3.4e-30 135.6 166 48.2
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 3.4e-30 135.6 153 52.3
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 3.4e-30 135.6 161 50.9
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 7.5e-30 134.4 153 52.3
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 7.5e-30 134.4 155 47.7
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.3e-29 133.7 156 50.6
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 1.3e-29 133.7 160 48.8
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 1.3e-29 133.7 137 58.4
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 6.4e-29 131.3 152 50.0
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 8.3e-29 131.0 154 48.7
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 1.1e-28 130.6 152 48.0
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.8e-28 129.8 156 50.0
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 4.1e-28 128.6 118 55.9
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.1e-28 128.6 158 47.5
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.1e-28 128.6 158 47.5
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 4.1e-28 128.6 155 47.1
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 4.1e-28 128.6 155 47.1
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 9.2e-28 127.5 150 49.3
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 2.7e-27 125.9 152 47.4
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 2.7e-27 125.9 156 48.1
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 7.8e-27 124.4 130 51.5
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 1.0e-26 124.0 150 48.0
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 1.7e-26 123.2 153 48.4
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 3.9e-26 122.1 156 46.2
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 6.6e-26 121.3 151 46.4
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 6.6e-26 121.3 157 43.9
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 3.3e-25 119.0 124 52.4
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 4.3e-25 118.6 154 48.7
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 9.5e-25 117.5 122 51.6
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 3.6e-24 115.5 147 46.9
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 6.2e-24 114.8 160 46.2
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 6.2e-24 114.8 152 45.4
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 1.8e-23 113.2 156 45.5
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.8e-23 113.2 146 46.6
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.3e-23 112.8 161 44.1
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.8e-23 111.3 156 46.8
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 8.9e-23 110.9 157 47.8
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.2e-22 110.5 123 47.2
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 1.5e-22 110.2 120 45.0
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 2.0e-22 109.8 133 43.6
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.6e-22 109.4 155 43.9
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 3.4e-22 109.0 156 50.0
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 3.4e-22 109.0 148 42.6
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 7.5e-22 107.8 153 46.4
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.9e-21 105.1 156 42.3
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 6.4e-21 104.8 144 43.8
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 6.4e-21 104.8 121 49.6
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 8.3e-21 104.4 151 43.0
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.9e-20 103.2 157 45.2
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.9e-20 103.2 115 49.6
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 1.9e-20 103.2 158 39.9
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 2.4e-20 102.8 156 39.1
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 3.2e-20 102.4 155 42.6
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 4.1e-20 102.1 161 44.7
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 5.4e-20 101.7 120 42.5
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 5.4e-20 101.7 124 41.9
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 5.4e-20 101.7 157 43.3
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 1.2e-19 100.5 160 40.6
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 1.6e-19 100.1 155 43.2
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 2.0e-19 99.8 131 48.1
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.7e-19 99.4 118 43.2
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 4.6e-19 98.6 158 43.7
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 1.7e-18 96.7 151 41.7
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.7e-18 96.7 141 42.6
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 3.0e-18 95.9 151 41.7
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 5.0e-18 95.1 117 41.9
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 4.3e-17 92.0 151 41.7
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.3e-17 92.0 148 43.9
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 4.3e-17 92.0 155 36.1
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 4.3e-17 92.0 151 41.7
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 7.3e-17 91.3 156 39.7
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 9.5e-17 90.9 151 42.4
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 9.5e-17 90.9 161 38.5
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.6e-16 90.1 134 44.8
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.6e-16 90.1 152 41.4
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 3.6e-16 89.0 166 38.0
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 8.1e-16 87.8 148 44.6
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 8.1e-16 87.8 106 44.3
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 1.1e-15 87.4 166 37.3
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.1e-15 87.4 150 44.7
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.1e-15 87.4 157 38.9
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.4e-15 87.0 150 44.7
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 1.4e-15 87.0 118 43.2
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-15 86.3 107 47.7
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-15 86.3 157 40.1
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 3.1e-15 85.9 151 39.7
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.1e-15 85.9 105 46.7
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 5.2e-15 85.1 159 39.6
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 6.8e-15 84.7 145 37.2
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 6.8e-15 84.7 157 40.1
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 6.8e-15 84.7 157 39.5
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 8.9e-15 84.3 153 34.0
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 8.9e-15 84.3 157 39.5
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 1.5e-14 83.6 148 39.9
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 2.0e-14 83.2 156 36.5
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 2.0e-14 83.2 105 44.8
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 2.6e-14 82.8 156 35.9
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 2.6e-14 82.8 159 36.5
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 4.4e-14 82.0 160 41.9
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 5.8e-14 81.6 118 40.7
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 5.8e-14 81.6 118 40.7
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 5.8e-14 81.6 118 40.7
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 5.8e-14 81.6 159 36.5
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.5e-14 81.3 147 40.1
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.8e-14 80.9 140 37.9
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-13 80.1 157 38.9
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 2.2e-13 79.7 161 34.8
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 2.2e-13 79.7 162 37.7
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 2.9e-13 79.3 162 38.3
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 6.4e-13 78.2 151 35.1
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 8.3e-13 77.8 147 39.5
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.1e-12 77.4 111 39.6
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 5.4e-12 75.1 156 35.9
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 5.4e-12 75.1 162 37.0
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 5.4e-12 75.1 162 37.0
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 7.1e-12 74.7 147 36.7
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 9.2e-12 74.3 148 38.5
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 9.2e-12 74.3 162 37.0
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 1.6e-11 73.6 150 34.0
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 2.1e-11 73.2 99 43.4
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 2.7e-11 72.8 126 41.3
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 7.8e-11 71.2 156 35.3
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.7e-10 70.1 109 45.0
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 2.3e-10 69.7 172 34.3
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 2.3e-10 69.7 172 34.3
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 3.0e-10 69.3 173 34.1
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 3.0e-10 69.3 172 33.7
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.0e-10 69.3 201 32.8
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 3.9e-10 68.9 172 33.7
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.9e-10 68.9 84 41.7
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 6.6e-10 68.2 136 41.9
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 3.3e-09 65.9 156 30.8
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 4.3e-09 65.5 95 42.1
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 4.3e-09 65.5 95 42.1
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.3e-09 64.7 147 36.1
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 9.5e-09 64.3 135 36.3
Hma1.2p1_0078F.1_g040470 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.2e-08 63.9 158 36.7
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 5.2e-07 58.5 150 36.7
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 5.2e-07 58.5 136 36.8
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.5e-06 57.0 138 36.2
MELO3C006672.2 Cucumis melo HOM05D003565 ORTHO05D003943 7.6e-06 54.7 120 39.2
FvH4_4g18450 Fragaria vesca HOM05D057627 ORTHO05D046375 7.6e-06 54.7 124 32.3
DCAR_022428 Daucus carota HOM05D003565 ORTHO05D003943 9.9e-06 54.3 125 34.4
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 9.9e-06 54.3 148 31.8


User provided reference genes

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