Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 2.6e-84 315.5 175 100.0
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 7.0e-69 264.2 185 81.1
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 9.4e-66 253.8 185 78.4
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 4.7e-65 251.5 185 78.4
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 1.7e-59 233.0 175 78.9
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 1.4e-56 223.4 171 76.0
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 3.0e-56 222.2 181 71.3
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 4.0e-56 221.9 174 74.7
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 4.0e-56 221.9 181 72.4
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 6.8e-56 221.1 171 75.4
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 6.8e-56 221.1 184 70.7
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 3.4e-55 218.8 182 69.2
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 3.4e-55 218.8 180 72.8
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 4.4e-55 218.4 180 72.8
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 4.4e-55 218.4 180 72.8
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 9.8e-55 217.2 180 72.2
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 9.8e-55 217.2 179 72.1
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 1.3e-54 216.9 168 71.4
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 1.7e-54 216.5 179 69.8
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 1.7e-54 216.5 180 70.6
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 1.7e-54 216.5 175 69.7
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 3.7e-54 215.3 152 78.3
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 6.3e-54 214.5 172 70.9
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 8.3e-54 214.2 171 70.2
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 1.8e-53 213.0 174 69.5
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 1.2e-52 210.3 178 68.0
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 1.6e-52 209.9 142 80.3
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 1.6e-52 209.9 178 69.7
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 2.7e-52 209.1 170 68.2
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 2.7e-52 209.1 170 68.2
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 4.5e-52 208.4 182 68.1
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 2.2e-51 206.1 174 69.5
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 2.2e-51 206.1 172 70.3
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 2.9e-51 205.7 179 67.0
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 2.9e-51 205.7 171 66.7
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 3.2e-50 202.2 174 66.7
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 4.2e-50 201.8 182 67.0
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 4.2e-50 201.8 154 74.0
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 3.6e-49 198.7 177 67.8
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 4.7e-49 198.4 173 69.4
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 4.7e-49 198.4 173 69.4
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 8.0e-49 197.6 172 69.8
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 8.0e-49 197.6 173 65.3
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.4e-48 196.8 169 71.0
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.4e-48 196.8 169 71.0
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 1.4e-48 196.8 180 67.2
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 4.0e-48 195.3 175 70.3
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 5.2e-48 194.9 177 67.8
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 5.2e-48 194.9 179 68.2
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 1.2e-47 193.7 179 63.7
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.2e-47 193.7 189 61.9
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 3.4e-47 192.2 169 66.9
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 4.4e-47 191.8 180 62.8
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 5.7e-47 191.4 175 68.6
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 5.7e-47 191.4 152 70.4
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 5.7e-47 191.4 161 65.8
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 7.5e-47 191.0 175 66.9
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.7e-46 189.9 181 66.3
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 2.2e-46 189.5 177 64.4
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 2.2e-46 189.5 177 65.5
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 2.8e-46 189.1 155 65.8
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 3.7e-46 188.7 129 79.8
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 2.4e-45 186.0 174 63.8
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 2.4e-45 186.0 178 65.2
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 4.1e-45 185.3 178 64.6
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 7.0e-45 184.5 177 62.1
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 7.0e-45 184.5 176 63.6
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 9.1e-45 184.1 177 63.3
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 1.2e-44 183.7 181 60.8
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 1.2e-44 183.7 186 60.8
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 1.2e-44 183.7 173 64.2
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 1.6e-44 183.3 185 60.0
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 1.6e-44 183.3 178 65.2
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 3.5e-44 182.2 182 63.7
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 3.5e-44 182.2 180 63.9
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 4.5e-44 181.8 177 63.3
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 5.9e-44 181.4 155 67.7
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 7.7e-44 181.0 189 59.3
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 7.7e-44 181.0 189 59.3
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 7.7e-44 181.0 173 63.6
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 1.0e-43 180.6 178 62.9
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 1.3e-43 180.3 169 66.9
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 1.3e-43 180.3 169 66.3
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 2.9e-43 179.1 182 60.4
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 2.9e-43 179.1 184 60.3
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 2.9e-43 179.1 182 60.4
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 3.8e-43 178.7 184 60.3
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 5.0e-43 178.3 178 61.8
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 6.6e-43 177.9 174 62.6
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 1.1e-42 177.2 179 60.3
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 1.5e-42 176.8 190 57.9
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 1.9e-42 176.4 176 59.7
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 2.5e-42 176.0 180 61.1
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 4.2e-42 175.3 176 60.2
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 4.2e-42 175.3 194 58.8
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 9.5e-42 174.1 217 54.4
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 1.6e-41 173.3 179 62.0
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 2.8e-41 172.6 129 72.1
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 2.8e-41 172.6 130 71.5
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 2.8e-41 172.6 129 72.1
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 3.6e-41 172.2 188 56.4
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 4.7e-41 171.8 176 61.4
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 1.8e-40 169.9 185 59.5
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 2.3e-40 169.5 118 80.5
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 3.4e-39 165.6 114 76.3
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 9.8e-39 164.1 179 57.0
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 4.1e-37 158.7 128 68.0
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 2.9e-35 152.5 266 43.6
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 8.9e-32 141.0 122 66.4
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 1.3e-30 137.1 175 50.9
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 2.9e-30 136.0 148 56.1
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 2.7e-28 129.4 180 48.3
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 6.0e-28 128.3 162 51.9
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 2.5e-26 122.9 157 52.2
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 2.3e-24 116.3 337 34.4
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 3.1e-24 115.9 144 49.3
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 6.8e-24 114.8 194 42.8
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 9.8e-23 110.9 158 45.6
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 2.9e-22 109.4 136 52.2
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 2.4e-21 106.3 74 70.3
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 1.6e-20 103.6 173 43.9
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 7.3e-18 94.7 104 59.6
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 3.1e-16 89.4 83 55.4
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 4.0e-16 89.0 108 50.9
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 4.0e-16 89.0 71 64.8
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 4.9e-14 82.0 96 57.3
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 1.1e-10 70.9 53 75.5
MCO10G118 Micromonas commoda HOM05D006014 ORTHO05D007608 4.3e-10 68.9 91 45.1
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 8.1e-09 64.7 74 59.5
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 1.8e-08 63.5 108 44.4


User provided reference genes

Program Settings