Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 2.2e-296 1021.5 509 100.0
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 2.6e-294 1014.6 509 99.4
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 1.6e-270 935.6 507 91.9
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 2.2e-264 915.2 507 90.1
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 1.4e-263 912.5 507 89.9
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 3.2e-263 911.4 507 89.7
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 3.3e-244 848.2 507 82.6
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 1.6e-243 845.9 507 82.2
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 6.6e-237 823.9 508 80.5
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 1.1e-236 823.2 507 82.2
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 3.3e-236 821.6 507 79.9
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 4.3e-236 821.2 507 80.9
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 5.6e-236 820.8 508 80.1
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 6.2e-235 817.4 507 79.5
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 6.2e-235 817.4 507 80.9
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 4.0e-234 814.7 507 78.9
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 2.0e-233 812.4 506 79.6
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 2.6e-233 812.0 508 80.5
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 2.9e-232 808.5 507 80.3
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 6.4e-232 807.4 508 80.3
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.9e-231 805.8 508 79.9
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 3.2e-231 805.1 507 79.7
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 4.2e-231 804.7 506 79.1
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 4.2e-231 804.7 507 78.5
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 2.7e-230 802.0 520 76.9
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 3.5e-230 801.6 509 79.6
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 1.7e-229 799.3 506 78.7
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 5.1e-229 797.7 509 78.2
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 3.3e-228 795.0 507 78.9
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 1.6e-227 792.7 509 78.4
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 4.8e-227 791.2 507 79.1
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 1.8e-226 789.3 506 78.5
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 1.8e-226 789.3 508 77.4
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 9.0e-226 786.9 511 77.7
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 7.6e-225 783.9 506 77.9
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 9.9e-225 783.5 510 78.4
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 9.9e-225 783.5 510 78.4
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.8e-224 781.6 506 77.1
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 3.8e-224 781.6 507 77.5
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 1.9e-223 779.2 506 76.9
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 3.2e-223 778.5 507 77.1
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 7.1e-223 777.3 506 76.7
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.1e-222 775.8 506 76.7
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 2.7e-222 775.4 511 76.9
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.5e-222 775.0 506 76.5
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 7.9e-222 773.9 507 77.5
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 1.0e-221 773.5 507 76.3
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 1.8e-221 772.7 509 76.6
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 5.1e-221 771.2 508 76.6
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 2.5e-220 768.8 509 76.6
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 3.7e-219 765.0 507 76.3
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.8e-216 755.0 508 76.2
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 6.4e-216 754.2 507 75.1
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 1.1e-215 753.4 508 76.2
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 1.4e-215 753.1 511 75.0
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 4.6e-214 748.0 508 75.4
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 7.9e-214 747.3 510 74.9
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 2.3e-213 745.7 510 75.1
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 3.0e-213 745.3 508 74.2
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 1.5e-212 743.0 655 61.4
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 1.5e-212 743.0 520 72.7
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 4.3e-212 741.5 507 73.0
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 5.6e-212 741.1 508 73.6
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 4.0e-210 734.9 509 72.7
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 6.9e-210 734.2 509 73.5
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 6.9e-210 734.2 507 72.8
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 7.6e-209 730.7 509 71.5
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 2.2e-208 729.2 507 73.0
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 4.9e-208 728.0 509 72.1
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 4.9e-208 728.0 509 71.9
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 6.5e-208 727.6 509 70.5
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 8.4e-208 727.2 508 74.6
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 1.1e-207 726.9 511 71.0
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 4.2e-207 724.9 509 70.9
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 7.1e-207 724.2 508 73.0
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 7.1e-207 724.2 513 71.7
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 2.1e-206 722.6 523 71.7
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 7.9e-206 720.7 509 70.1
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 1.8e-205 719.5 509 69.9
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 2.3e-205 719.2 507 71.2
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 3.0e-205 718.8 509 70.3
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 5.1e-205 718.0 489 75.3
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 8.7e-205 717.2 508 71.1
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.1e-204 716.8 508 73.4
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 1.5e-204 716.5 507 72.4
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 3.7e-203 711.8 510 71.6
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 6.3e-203 711.1 510 72.0
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 2.4e-202 709.1 510 71.6
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 4.5e-201 704.9 510 71.2
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 1.4e-199 699.9 509 69.7
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 4.2e-199 698.4 507 70.0
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 1.0e-197 693.7 509 69.0
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 3.0e-197 692.2 509 68.6
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 3.3e-196 688.7 509 68.6
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 3.3e-196 688.7 509 68.6
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 5.7e-196 688.0 509 69.0
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 7.4e-196 687.6 509 68.4
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 2.8e-195 685.6 509 68.2
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 1.1e-194 683.7 509 68.8
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 1.4e-194 683.3 507 68.4
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 1.5e-193 679.9 509 68.0
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 7.7e-193 677.6 507 68.0
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 6.5e-192 674.5 459 74.9
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 9.7e-188 660.6 511 65.2
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 1.7e-187 659.8 513 65.5
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 1.1e-186 657.1 440 76.4
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 1.5e-185 653.3 509 66.6
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 6.5e-184 647.9 507 65.3
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 1.1e-180 637.1 508 65.0
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 3.1e-178 629.0 397 77.6
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 2.0e-177 626.3 507 63.7
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 1.1e-175 620.5 536 61.6
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 2.5e-175 619.4 484 65.9
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 2.9e-168 595.9 460 65.7
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 8.3e-163 577.8 455 65.5
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 2.5e-159 566.2 520 58.5
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 9.5e-159 564.3 366 75.7
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 9.5e-159 564.3 315 84.8
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 1.8e-157 560.1 427 67.7
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 3.0e-157 559.3 507 60.2
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 1.4e-154 550.4 507 55.8
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 4.3e-151 538.9 513 54.6
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 7.3e-151 538.1 300 83.7
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 5.8e-148 528.5 505 57.2
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 3.7e-147 525.8 512 53.7
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 2.4e-146 523.1 516 52.5
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 1.1e-143 514.2 531 52.0
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 2.9e-139 499.6 315 76.5
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 2.7e-129 466.5 315 72.1
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 2.2e-123 446.8 300 71.3
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 4.2e-122 442.6 554 45.8
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 1.4e-109 401.0 316 68.0
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 2.4e-101 373.6 257 69.6
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 2.4e-101 373.6 257 69.6
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 9.4e-66 255.4 227 63.4
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.4e-56 224.9 380 36.6
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 3.5e-36 157.1 130 66.9
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 4.4e-31 140.2 179 47.5
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 2.0e-28 131.3 287 34.1
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.5e-26 125.2 88 67.0
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 2.5e-26 124.4 304 32.9
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 1.2e-20 105.5 54 88.9
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 5.6e-18 96.7 56 78.6
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 6.2e-17 93.2 92 63.0
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.0e-11 75.9 50 72.0
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 6.6e-11 73.2 67 59.7


User provided reference genes

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