Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 2.3e-120 435.6 230 100.0
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 1.1e-103 380.2 228 85.1
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 5.0e-99 364.8 227 81.5
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 5.5e-98 361.3 227 81.1
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 2.1e-89 332.8 214 75.2
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 2.7e-89 332.4 214 75.2
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 2.7e-89 332.4 214 75.2
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 5.2e-88 328.2 214 71.0
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 8.8e-88 327.4 214 72.9
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 3.7e-86 322.0 228 67.5
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 4.8e-86 321.6 214 72.0
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 6.3e-86 321.2 214 72.4
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 1.8e-85 319.7 214 69.6
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 2.4e-85 319.3 214 70.1
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 5.3e-85 318.2 214 71.5
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 7.0e-85 317.8 213 70.0
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 1.6e-84 316.6 220 68.6
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 2.0e-84 316.2 214 72.4
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 7.7e-84 314.3 214 70.6
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 7.7e-84 314.3 214 72.0
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 1.0e-83 313.9 214 69.6
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 1.0e-83 313.9 214 67.8
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 2.2e-83 312.8 216 68.5
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 1.1e-82 310.5 214 69.2
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 3.2e-82 308.9 217 69.6
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 1.6e-81 306.6 214 69.2
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 1.6e-81 306.6 218 67.4
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 2.1e-81 306.2 215 68.8
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 3.6e-81 305.4 215 68.8
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 3.6e-81 305.4 215 68.8
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 4.7e-81 305.1 216 69.4
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 6.1e-81 304.7 211 68.2
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 6.1e-81 304.7 214 65.9
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 8.0e-81 304.3 214 66.4
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 8.0e-81 304.3 214 65.9
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 8.0e-81 304.3 214 67.8
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 1.0e-80 303.9 215 68.4
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 1.0e-80 303.9 214 68.2
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.0e-80 303.9 214 66.4
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 1.4e-80 303.5 215 67.9
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 2.3e-80 302.8 214 68.2
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 4.0e-80 302.0 211 66.8
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 4.0e-80 302.0 211 65.4
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 5.2e-80 301.6 214 66.4
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 6.7e-80 301.2 215 67.0
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 6.7e-80 301.2 215 67.4
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 8.8e-80 300.8 215 67.4
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 8.8e-80 300.8 215 67.4
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.0e-79 299.7 216 68.1
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 5.7e-79 298.1 209 66.5
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 5.7e-79 298.1 214 65.0
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 9.7e-79 297.4 216 66.2
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 2.2e-78 296.2 215 66.5
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 2.2e-78 296.2 215 66.5
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 2.8e-78 295.8 217 65.0
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.8e-78 295.8 214 66.4
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 2.8e-78 295.8 216 68.1
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 2.8e-78 295.8 201 70.1
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 3.7e-78 295.4 214 64.5
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 4.8e-78 295.0 221 65.2
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 4.8e-78 295.0 214 66.4
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 8.2e-78 294.3 214 65.9
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 1.1e-77 293.9 216 66.2
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 2.4e-77 292.7 201 68.7
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 2.4e-77 292.7 214 67.3
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 5.3e-77 291.6 214 64.0
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 7.0e-77 291.2 206 66.0
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 7.0e-77 291.2 214 65.0
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 7.0e-77 291.2 214 63.6
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 9.1e-77 290.8 216 65.7
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 9.1e-77 290.8 214 64.0
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 2.7e-76 289.3 214 64.0
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 3.5e-76 288.9 214 65.0
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 3.5e-76 288.9 228 63.6
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 4.5e-76 288.5 216 65.3
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 1.3e-75 287.0 214 62.1
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 2.2e-75 286.2 217 65.0
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 2.9e-75 285.8 217 64.5
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 6.5e-75 284.6 211 63.0
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 8.5e-75 284.3 227 64.3
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 1.1e-74 283.9 228 64.5
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 7.2e-74 281.2 212 65.6
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 7.2e-74 281.2 201 67.7
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 3.6e-73 278.9 203 68.0
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 6.1e-73 278.1 211 62.1
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 8.0e-73 277.7 193 67.9
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 1.8e-72 276.6 204 63.7
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 4.0e-72 275.4 209 63.2
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 4.0e-72 275.4 215 63.3
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 4.4e-71 271.9 210 62.4
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 5.7e-71 271.6 271 51.3
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 7.5e-71 271.2 209 60.8
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 7.5e-71 271.2 201 64.7
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.3e-70 270.4 214 58.4
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 4.8e-70 268.5 207 62.3
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 4.8e-70 268.5 207 62.3
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.1e-69 267.3 199 62.8
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.1e-69 267.3 210 62.4
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 4.1e-69 265.4 196 65.3
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 2.0e-68 263.1 209 60.8
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 4.5e-68 261.9 176 70.5
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 5.9e-68 261.5 209 62.2
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 5.0e-67 258.5 215 61.4
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 8.6e-67 257.7 204 59.8
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 3.3e-66 255.8 205 61.0
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 7.2e-66 254.6 177 69.5
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 9.5e-66 254.2 177 69.5
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 2.1e-65 253.1 175 70.9
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 2.1e-65 253.1 209 57.9
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 4.7e-65 251.9 194 60.3
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 6.1e-65 251.5 215 60.5
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.4e-64 250.4 172 69.8
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 1.4e-64 250.4 198 64.6
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.0e-59 234.2 162 69.1
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 3.9e-59 232.3 211 56.9
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 1.1e-58 230.7 204 58.3
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 3.3e-58 229.2 149 69.8
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 9.5e-58 227.6 208 54.3
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 6.1e-57 224.9 154 69.5
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.8e-56 223.4 202 54.0
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.8e-56 223.4 202 54.0
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 8.9e-56 221.1 150 69.3
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.5e-55 220.3 212 51.9
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 3.4e-55 219.2 198 54.5
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.3e-54 217.2 166 62.0
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 2.4e-53 213.0 153 68.6
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 5.4e-53 211.8 217 53.5
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 7.0e-53 211.5 211 50.2
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 2.3e-51 206.5 214 49.5
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 1.6e-49 200.3 209 49.8
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 1.6e-49 200.3 214 51.4
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 2.8e-49 199.5 210 46.2
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 3.1e-48 196.1 214 50.0
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 3.2e-45 186.0 217 49.3
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 4.1e-45 185.7 151 55.0
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 8.9e-40 167.9 214 42.5
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 2.6e-39 166.4 157 52.2
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 4.4e-39 165.6 205 42.4
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.7e-38 163.7 209 43.5
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 3.7e-38 162.5 161 49.1
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 8.3e-38 161.4 134 63.4
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.9e-37 160.2 208 44.2
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 7.8e-36 154.8 211 39.3
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 5.1e-35 152.1 89 74.2
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.1e-34 151.0 126 57.1
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 3.8e-30 136.0 94 71.3
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 2.1e-28 130.2 214 39.3
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 1.7e-27 127.1 214 38.3
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 5.6e-26 122.1 125 48.8
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.2e-22 110.2 69 71.0
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 4.2e-21 105.9 173 40.5
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 3.0e-19 99.8 84 56.0
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 3.9e-19 99.4 80 60.0
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 3.3e-18 96.3 86 60.5
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 9.0e-16 88.2 71 62.0
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 2.7e-12 76.6 196 32.1


User provided reference genes

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