Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 5.5e-287 990.3 527 100.0
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 5.6e-231 804.3 523 83.2
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 3.1e-229 798.5 523 83.4
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 3.9e-224 781.6 522 82.8
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 3.3e-223 778.5 524 81.7
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 4.3e-199 698.4 508 75.2
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 1.3e-198 696.8 520 74.2
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 2.4e-197 692.6 522 72.2
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 1.6e-193 679.9 459 78.6
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 1.1e-191 673.7 438 79.9
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 2.0e-191 672.9 531 71.0
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 2.8e-190 669.1 463 77.3
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 4.1e-189 665.2 510 72.0
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 2.0e-188 662.9 525 70.7
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 2.6e-188 662.5 574 66.6
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 3.5e-188 662.1 439 79.5
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 4.5e-188 661.8 482 73.2
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 5.9e-188 661.4 523 69.0
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 5.9e-188 661.4 434 79.3
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 7.7e-188 661.0 467 76.2
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.3e-187 660.2 458 77.3
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 2.2e-187 659.4 480 74.4
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 2.2e-187 659.4 434 78.8
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 2.2e-187 659.4 434 78.8
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 2.9e-187 659.1 439 77.9
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 3.8e-187 658.7 496 72.0
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 3.8e-187 658.7 530 68.9
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 5.0e-187 658.3 480 74.2
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 5.0e-187 658.3 480 74.2
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 6.5e-187 657.9 440 79.5
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 8.5e-187 657.5 484 73.3
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 8.5e-187 657.5 516 70.3
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 1.1e-186 657.1 515 71.8
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 1.4e-186 656.8 517 70.4
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 1.9e-186 656.4 434 78.3
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 2.5e-186 656.0 514 69.8
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.5e-186 656.0 515 71.7
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 7.2e-186 654.4 439 78.4
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 9.4e-186 654.1 439 78.6
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 1.2e-185 653.7 514 70.0
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 1.6e-185 653.3 512 70.5
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 1.6e-185 653.3 536 67.2
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 2.7e-185 652.5 459 74.9
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 3.6e-185 652.1 458 75.3
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 4.7e-185 651.7 530 68.1
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 4.7e-185 651.7 503 72.2
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 6.1e-185 651.4 527 67.7
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 8.0e-185 651.0 517 70.0
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 1.0e-184 650.6 503 70.0
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 1.4e-184 650.2 533 66.4
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 2.3e-184 649.4 536 66.8
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 2.3e-184 649.4 421 79.8
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 3.0e-184 649.0 512 68.9
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 3.0e-184 649.0 533 66.4
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 5.2e-184 648.3 468 74.4
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 6.7e-184 647.9 439 76.3
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 8.8e-184 647.5 495 70.9
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 1.1e-183 647.1 439 77.2
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 2.0e-183 646.4 530 67.7
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 4.4e-183 645.2 441 76.4
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 9.7e-183 644.0 438 78.3
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 1.3e-182 643.7 457 73.7
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 3.7e-182 642.1 448 74.8
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 2.4e-181 639.4 521 68.3
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 3.1e-181 639.0 413 80.4
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 4.5e-180 635.2 418 78.5
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 5.9e-180 634.8 432 77.1
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 7.7e-180 634.4 479 71.0
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 7.7e-180 634.4 473 72.7
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 1.0e-179 634.0 440 77.0
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.0e-179 634.0 536 67.9
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 1.7e-179 633.3 437 75.5
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 8.5e-179 630.9 516 68.0
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 8.5e-179 630.9 516 68.0
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 8.5e-179 630.9 535 66.4
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 8.5e-179 630.9 453 72.8
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 8.5e-179 630.9 501 68.3
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 1.9e-178 629.8 424 77.4
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 1.9e-178 629.8 447 73.6
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 5.5e-178 628.2 439 74.5
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 5.5e-178 628.2 420 78.1
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 9.4e-178 627.5 527 66.4
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 9.4e-178 627.5 431 77.0
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.2e-177 627.1 440 73.6
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 1.6e-177 626.7 404 80.4
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 2.7e-177 625.9 516 67.8
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 2.7e-177 625.9 443 74.5
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 3.0e-176 622.5 456 72.1
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 4.0e-176 622.1 565 61.8
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 1.2e-175 620.5 488 67.0
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 5.7e-175 618.2 455 71.0
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 2.2e-174 616.3 452 73.9
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 2.2e-174 616.3 519 66.3
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 3.7e-174 615.5 418 76.1
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 3.7e-174 615.5 443 73.8
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 7.0e-173 611.3 437 73.2
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 7.0e-173 611.3 404 77.2
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 7.0e-173 611.3 455 70.5
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 5.9e-172 608.2 434 74.7
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 7.7e-172 607.8 443 72.7
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 2.2e-171 606.3 461 71.6
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 6.5e-171 604.7 432 72.7
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 4.2e-170 602.1 511 64.4
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 6.1e-169 598.2 427 73.1
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 6.8e-168 594.7 426 71.6
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 7.5e-167 591.3 529 65.4
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 5.4e-165 585.1 443 69.3
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 2.7e-164 582.8 462 69.5
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 4.5e-164 582.0 470 66.8
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 2.5e-154 549.7 421 71.7
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 3.3e-154 549.3 455 65.5
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 1.6e-153 547.0 436 67.0
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 5.8e-151 538.5 522 61.3
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 3.7e-150 535.8 445 65.6
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 3.7e-150 535.8 445 65.6
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 3.6e-137 492.7 438 59.1
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 9.6e-130 468.0 430 57.0
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 3.4e-127 459.5 441 55.6
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 7.6e-127 458.4 376 68.6
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 8.4e-118 428.3 367 61.3
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 1.9e-117 427.2 340 67.9
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 1.2e-111 407.9 342 64.6
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 6.5e-102 375.6 230 84.3
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.1e-93 348.2 445 45.6
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 1.2e-87 328.2 422 47.9
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 3.6e-76 290.0 439 40.8
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 6.1e-76 289.3 292 57.5
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.3e-75 287.3 288 58.3
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 1.1e-69 268.5 384 39.3
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 4.2e-69 266.5 167 86.2
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 2.0e-66 257.7 176 80.1
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 1.7e-62 244.6 396 35.4
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 5.5e-61 239.6 214 60.3
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.6e-55 221.5 376 35.6
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 4.7e-52 209.9 452 35.0
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 8.8e-51 205.7 162 64.2
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 2.6e-50 204.1 249 51.0
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 1.8e-35 154.8 143 62.2
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 9.8e-34 149.1 124 59.7
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.4e-27 128.6 121 57.0
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.8e-27 128.3 86 72.1
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 7.5e-26 122.9 147 51.7
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 1.1e-24 119.0 98 69.4
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 4.0e-19 100.5 382 24.9
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 2.2e-17 94.7 94 56.4
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 1.1e-11 75.9 220 28.6
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 5.2e-11 73.6 424 25.2
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 2.4e-08 64.7 67 59.7


User provided reference genes

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