Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003904 Sechium edule HOM05D007431 ORTHO05D008438 6.8e-133 477.6 297 100.0
ClCG02G020690 Citrullus lanatus HOM05D021867 ORTHO05D008438 2.6e-44 183.3 360 45.3
CsaV3_6G021930 Cucumis sativus L. HOM05D021867 ORTHO05D008438 4.2e-42 176.0 359 42.9
MELO3C025719.2 Cucumis melo HOM05D021867 ORTHO05D008438 7.0e-29 132.1 206 48.5
Sed0011387 Sechium edule HOM05D007431 ORTHO05D008438 4.5e-20 102.8 66 84.8
TAR623G0663 Trochodendron aralioides HOM05D007431 ORTHO05D008438 1.3e-14 84.7 67 67.2
CANSAT11G1515 Cannabis sativa HOM05D007431 ORTHO05D008438 8.3e-14 82.0 65 66.2
COL.COLO4_18404 Corchorus olitorius HOM05D007431 ORTHO05D008438 1.4e-13 81.3 180 40.0
Cfa011407 Carpinus fangiana HOM05D023024 ORTHO05D008438 2.4e-13 80.5 291 32.3
Sed0014169 Sechium edule HOM05D007431 ORTHO05D008438 3.2e-13 80.1 107 55.1
Nn2g12944 Nelumbo nucifera HOM05D007431 ORTHO05D008438 5.4e-13 79.3 65 66.2
Atru.chr3.3765 Acer truncatum HOM05D007431 ORTHO05D008438 2.7e-12 77.0 153 37.3
CSS0032205 Camellia sinensis var. sinensis HOM05D007431 ORTHO05D008438 7.8e-12 75.5 65 63.1
Thecc.09G259600 Theobroma cacao HOM05D007431 ORTHO05D008438 7.8e-12 75.5 145 41.4
Aa31LG4G15040 Aethionema arabicum HOM05D007431 ORTHO05D008438 1.0e-11 75.1 97 49.5
MD11G1119300 Malus domestica HOM05D016629 ORTHO05D008438 1.3e-11 74.7 153 39.9
Sc12g0001910 Simmondsia chinensis HOM05D007431 ORTHO05D008438 1.3e-11 74.7 128 44.5
Thecc.03G012200 Theobroma cacao HOM05D007431 ORTHO05D008438 1.7e-11 74.3 79 57.0
Gohir.A03G036200 Gossypium hirsutum HOM05D007431 ORTHO05D008438 2.3e-11 73.9 178 39.3
Prupe.6G089500 Prunus persica HOM05D016629 ORTHO05D008438 2.3e-11 73.9 87 51.7
Haze_02139 Corylus avellana HOM05D023024 ORTHO05D008438 3.0e-11 73.6 260 34.2
QL01p035383 Quercus lobata HOM05D007431 ORTHO05D008438 5.0e-11 72.8 90 51.1
AL8G36620 Arabidopsis lyrata HOM05D007431 ORTHO05D008438 6.6e-11 72.4 60 65.0
AT5G60030 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 6.6e-11 72.4 63 63.5
EL10Ac7g15930 Beta vulgaris HOM05D008034 ORTHO05D010051 6.6e-11 72.4 291 32.0
Duzib168G1071 Durio zibethinus HOM05D007431 ORTHO05D008438 6.6e-11 72.4 78 55.1
Ah.15g096430 Amaranthus hybridus HOM05D007431 ORTHO05D008438 8.6e-11 72.0 84 57.1
Haze_23978 Corylus avellana HOM05D023024 ORTHO05D008438 8.6e-11 72.0 255 31.4
THA.LOC104799471 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 8.6e-11 72.0 175 33.1
TAR369G0100 Trochodendron aralioides HOM05D007431 ORTHO05D008438 8.6e-11 72.0 58 67.2
Lj1P179T36 Lonicera japonica HOM05D007431 ORTHO05D008438 2.5e-10 70.5 88 52.3
MD03G1106700 Malus domestica HOM05D016629 ORTHO05D008438 2.5e-10 70.5 56 69.6
Lalb_Chr24g0399681 Lupinus albus HOM05D007431 ORTHO05D008438 3.3e-10 70.1 223 38.1
Actinidia00802 Actinidia chinensis HOM05D007431 ORTHO05D008438 5.6e-10 69.3 94 52.1
Hma1.2p1_0321F.1_g124100 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 5.6e-10 69.3 67 62.7
AT1G75335 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 7.3e-10 68.9 63 60.3
Hma1.2p1_0321F.1_g124110 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 7.3e-10 68.9 67 62.7
Aa31LG1G12150 Aethionema arabicum HOM05D007431 ORTHO05D008438 1.2e-09 68.2 61 60.7
A02p06640 Brassica napus HOM05D007431 ORTHO05D008438 2.1e-09 67.4 67 55.2
C02p11930 Brassica napus HOM05D007431 ORTHO05D008438 2.1e-09 67.4 67 55.2
BolC2t07290H Brassica oleracea HOM05D007431 ORTHO05D008438 2.1e-09 67.4 67 55.2
BraA02t05746Z Brassica rapa HOM05D007431 ORTHO05D008438 2.1e-09 67.4 67 55.2
Dinv06340 Davidia involucrata HOM05D007431 ORTHO05D008438 2.1e-09 67.4 168 35.7
Carub.0002s2217 Capsella rubella HOM05D007431 ORTHO05D008438 2.8e-09 67.0 63 57.1
C03p13110 Brassica napus HOM05D007431 ORTHO05D008438 4.7e-09 66.2 61 59.0
Carub.0008s2073 Capsella rubella HOM05D007431 ORTHO05D008438 4.7e-09 66.2 104 44.2
DCAR_003389 Daucus carota HOM05D007431 ORTHO05D008438 4.7e-09 66.2 66 57.6
HanXRQChr14g0439961 Helianthus annuus HOM05D007431 ORTHO05D008438 6.2e-09 65.9 76 53.9
Sp6g21690 Schrenkiella parvula HOM05D007431 ORTHO05D008438 6.2e-09 65.9 105 43.8
THA.LOC104810823 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 6.2e-09 65.9 135 37.0
BolC3t13774H Brassica oleracea HOM05D007431 ORTHO05D008438 8.0e-09 65.5 61 59.0
AUR62034380 Chenopodium quinoa HOM05D007431 ORTHO05D008438 8.0e-09 65.5 250 30.8
arahy.Tifrunner.gnm1.ann1.C9XA4X Arachis hypogaea HOM05D007431 ORTHO05D008438 1.1e-08 65.1 172 37.8
BcaB05g22609 Brassica carinata HOM05D007431 ORTHO05D008438 1.1e-08 65.1 96 45.8
Cpa.g.sc139.17 Carica papaya HOM05D007431 ORTHO05D008438 1.1e-08 65.1 241 33.2
VMungo0647G2370 Vigna mungo HOM05D007431 ORTHO05D008438 1.1e-08 65.1 246 30.9
Ca_13166_v3 Cicer arietinum L. HOM05D007431 ORTHO05D008438 1.4e-08 64.7 185 38.4
Lalb_Chr22g0356011 Lupinus albus HOM05D007431 ORTHO05D008438 1.4e-08 64.7 222 34.2
MBI15_g23248_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 1.8e-08 64.3 65 61.5
Potri.019G095600 Populus trichocarpa HOM05D007431 ORTHO05D008438 1.8e-08 64.3 149 36.9
DCAR_011227 Daucus carota HOM05D007431 ORTHO05D008438 2.3e-08 63.9 66 56.1
DCAR_011228 Daucus carota HOM05D007431 ORTHO05D008438 2.3e-08 63.9 66 56.1
MBI11_g07544_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 3.1e-08 63.5 65 61.5
Potri.013G126701 Populus trichocarpa HOM05D007431 ORTHO05D008438 3.1e-08 63.5 65 56.9
Aqoxy4G03128 Aquilegia oxysepala HOM05D007431 ORTHO05D008438 4.0e-08 63.2 59 62.7
A03p11360 Brassica napus HOM05D007431 ORTHO05D008438 4.0e-08 63.2 61 55.7
Phvul.001G035300 Phaseolus vulgaris HOM05D007431 ORTHO05D008438 4.0e-08 63.2 286 32.5
Phvul.001G035400 Phaseolus vulgaris HOM05D007431 ORTHO05D008438 5.2e-08 62.8 168 38.1
RhsimUnG0043300 Rhododendron simsii HOM05D002794 ORTHO05D008438 5.2e-08 62.8 67 52.2
MBI18_g47623_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 6.8e-08 62.4 65 60.0
Ciclev10028956m.g Citrus clementina HOM05D007431 ORTHO05D008438 8.9e-08 62.0 194 40.2
Lsat_1_v5_gn_8_91980 Lactuca sativa HOM05D007431 ORTHO05D008438 8.9e-08 62.0 76 52.6
PSO384G2622 Papaver somniferum HOM05D007431 ORTHO05D008438 8.9e-08 62.0 95 42.1
Sabra13G0105800 Salix brachista HOM05D007431 ORTHO05D008438 8.9e-08 62.0 90 44.4
BraA03t10450Z Brassica rapa HOM05D007431 ORTHO05D008438 1.2e-07 61.6 91 44.0
Gohir.D03G132100 Gossypium hirsutum HOM05D007431 ORTHO05D008438 1.5e-07 61.2 246 30.5
Lsat_1_v5_gn_2_80021 Lactuca sativa HOM05D007431 ORTHO05D008438 1.5e-07 61.2 94 44.7
MBI15_g23251_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 1.5e-07 61.2 65 60.0
Medtr1g016270 Medicago truncatula HOM05D007431 ORTHO05D008438 1.5e-07 61.2 236 31.4
Nn2g10588 Nelumbo nucifera HOM05D007431 ORTHO05D008438 2.0e-07 60.8 62 54.8
CiPaw.14G074700 Carya illinoinensis HOM05D023024 ORTHO05D008438 2.6e-07 60.5 252 31.7
Glyma.14G094600 Glycine max HOM05D007431 ORTHO05D008438 2.6e-07 60.5 226 30.5
PSO339G3784 Papaver somniferum HOM05D007431 ORTHO05D008438 2.6e-07 60.5 124 39.5
MBI15_g23247_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 4.4e-07 59.7 64 59.4
CARHR068680 Cardamine hirsuta HOM05D007431 ORTHO05D008438 5.8e-07 59.3 63 50.8
Dinv32831 Davidia involucrata HOM05D001089 ORTHO05D008438 5.8e-07 59.3 164 34.1
Gorai.003G139000 Gossypium raimondii HOM05D007431 ORTHO05D008438 7.5e-07 58.9 246 31.3
PGR102G0834 Punica granatum HOM05D007431 ORTHO05D008438 7.5e-07 58.9 162 33.3
AUR62022321 Chenopodium quinoa HOM05D007431 ORTHO05D008438 1.3e-06 58.2 274 32.5
Manes.07G083300 Manihot esculenta HOM05D007431 ORTHO05D008438 1.3e-06 58.2 82 50.0
Eucgr.B01149 Eucalyptus grandis HOM05D007431 ORTHO05D008438 1.7e-06 57.8 186 29.6
TWI53G0129 Tripterygium wilfordii HOM05D007431 ORTHO05D008438 1.7e-06 57.8 174 36.8
Sabra19G0107900 Salix brachista HOM05D007431 ORTHO05D008438 3.7e-06 56.6 143 34.3
Nitab4.5_0002380g0010 Nicotiana tabacum HOM05D015294 ORTHO05D018867 4.9e-06 56.2 66 47.0
ECA238G2926 Erigeron canadensis HOM05D007431 ORTHO05D008438 8.3e-06 55.5 242 31.8


User provided reference genes

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