Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003799 Sechium edule HOM05D006155 ORTHO05D007529 6.7e-170 600.5 288 100.0
ClCG05G003860 Citrullus lanatus HOM05D006155 ORTHO05D007529 1.3e-117 426.8 293 74.7
MELO3C006364.2 Cucumis melo HOM05D006155 ORTHO05D007529 1.4e-111 406.8 274 74.8
CsaV3_3G011540 Cucumis sativus L. HOM05D006155 ORTHO05D007529 3.2e-111 405.6 277 75.5
Sed0011773 Sechium edule HOM05D006155 ORTHO05D007529 3.1e-106 389.0 230 80.4
Atru.chr4.1882 Acer truncatum HOM05D006155 ORTHO05D007529 2.6e-97 359.4 240 70.8
Ciclev10005577m.g Citrus clementina HOM05D006155 ORTHO05D007529 1.1e-95 354.0 239 70.7
Potri.010G063700 Populus trichocarpa HOM05D006155 ORTHO05D007529 1.4e-95 353.6 240 68.3
Haze_11491 Corylus avellana HOM05D006155 ORTHO05D007529 4.2e-95 352.1 268 65.7
Gohir.A10G106500 Gossypium hirsutum HOM05D006155 ORTHO05D007529 7.1e-95 351.3 266 65.0
Sabra10G0043200 Salix brachista HOM05D006155 ORTHO05D007529 7.1e-95 351.3 240 67.9
Thecc.04G268500 Theobroma cacao HOM05D006155 ORTHO05D007529 9.3e-95 350.9 264 64.8
PGR004G1196 Punica granatum HOM05D006155 ORTHO05D007529 1.6e-94 350.1 239 67.4
Gorai.011G180400 Gossypium raimondii HOM05D006155 ORTHO05D007529 2.7e-94 349.4 266 64.7
Gohir.D10G160700 Gossypium hirsutum HOM05D006155 ORTHO05D007529 6.0e-94 348.2 266 64.3
Cfa014810 Carpinus fangiana HOM05D006155 ORTHO05D007529 1.3e-93 347.1 234 70.9
Duzib151G0563 Durio zibethinus HOM05D006155 ORTHO05D007529 1.3e-93 347.1 240 69.2
A03p18670 Brassica napus HOM05D006155 ORTHO05D007529 2.3e-93 346.3 237 68.4
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 2.3e-93 346.3 233 68.7
Sp4g15560 Schrenkiella parvula HOM05D006155 ORTHO05D007529 3.0e-93 345.9 231 68.4
CANSAT78G1287 Cannabis sativa HOM05D006155 ORTHO05D007529 3.9e-93 345.5 237 68.4
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 5.1e-93 345.1 231 68.0
MD16G1230400 Malus domestica HOM05D006155 ORTHO05D007529 5.1e-93 345.1 231 69.3
BcaC02g07846 Brassica carinata HOM05D006155 ORTHO05D007529 6.7e-93 344.7 230 69.1
BraA03t11126Z Brassica rapa HOM05D006155 ORTHO05D007529 6.7e-93 344.7 237 67.9
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 6.7e-93 344.7 237 67.5
FvH4_4g05140 Fragaria vesca HOM05D006155 ORTHO05D007529 1.1e-92 344.0 239 66.9
FAN12G3888 Fragaria x ananassa HOM05D006155 ORTHO05D007529 1.5e-92 343.6 239 66.9
Prupe.1G052300 Prunus persica HOM05D006155 ORTHO05D007529 1.5e-92 343.6 232 68.1
Manes.15G047200 Manihot esculenta HOM05D006155 ORTHO05D007529 1.9e-92 343.2 229 71.2
DCAR_002295 Daucus carota HOM05D006155 ORTHO05D007529 2.5e-92 342.8 238 68.1
BcaC01g05849 Brassica carinata HOM05D006155 ORTHO05D007529 3.3e-92 342.4 230 69.6
BolC3t14563H Brassica oleracea HOM05D006155 ORTHO05D007529 3.3e-92 342.4 233 69.1
Hma1.2p1_0042F.1_g025650 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 5.6e-92 341.7 256 64.5
COL.COLO4_15996 Corchorus olitorius HOM05D006155 ORTHO05D007529 7.4e-92 341.3 217 71.9
Actinidia32965 Actinidia chinensis HOM05D006155 ORTHO05D007529 9.6e-92 340.9 262 63.4
C03p21810 Brassica napus HOM05D006155 ORTHO05D007529 9.6e-92 340.9 233 68.7
GSVIVG01027954001 Vitis vinifera HOM05D006155 ORTHO05D007529 9.6e-92 340.9 234 67.9
Actinidia35935 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.3e-91 340.5 226 69.0
Eucgr.H02890 Eucalyptus grandis HOM05D006155 ORTHO05D007529 1.3e-91 340.5 227 70.0
RcHm_v2.0_Chr4g0396071 Rosa chinensis HOM05D006155 ORTHO05D007529 1.6e-91 340.1 231 68.4
TWI09G0038 Tripterygium wilfordii HOM05D006155 ORTHO05D007529 1.6e-91 340.1 240 66.7
Aa31LG5G4150 Aethionema arabicum HOM05D006155 ORTHO05D007529 2.1e-91 339.7 235 67.7
CAN.G812.29 Capsicum annuum HOM05D006155 ORTHO05D007529 2.1e-91 339.7 233 66.5
Lj6C638T14 Lonicera japonica HOM05D006155 ORTHO05D007529 2.1e-91 339.7 223 69.5
SGA_v2.0_scaffold285G47059 Striga asiatica HOM05D006155 ORTHO05D007529 2.1e-91 339.7 276 60.1
THA.LOC104816010 Tarenaya hassleriana HOM05D006155 ORTHO05D007529 3.7e-91 339.0 234 66.7
SalBow3G4628 Salvia bowleyana HOM05D006155 ORTHO05D007529 4.8e-91 338.6 245 64.1
Lju2262C0T14 Lonicera japonica HOM05D006155 ORTHO05D007529 8.1e-91 337.8 223 69.1
Sopen09g033690 Solanum pennellii HOM05D006155 ORTHO05D007529 8.1e-91 337.8 223 69.1
AT2G33255 Arabidopsis thaliana HOM05D006155 ORTHO05D007529 1.1e-90 337.4 231 67.1
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 1.1e-90 337.4 233 67.0
BcaC02g07849 Brassica carinata HOM05D006155 ORTHO05D007529 1.1e-90 337.4 233 67.0
Dinv27131 Davidia involucrata HOM05D006155 ORTHO05D007529 1.1e-90 337.4 241 66.0
Lsat_1_v5_gn_1_76101 Lactuca sativa HOM05D006155 ORTHO05D007529 1.1e-90 337.4 219 69.9
Nitab4.5_0002937g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 1.8e-90 336.7 231 67.5
Nitab4.5_0003474g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 1.8e-90 336.7 237 65.4
arahy.Tifrunner.gnm1.ann1.NLE1X5 Arachis hypogaea HOM05D006155 ORTHO05D007529 2.4e-90 336.3 217 71.4
EL10Ac3g06713 Beta vulgaris HOM05D006155 ORTHO05D007529 3.1e-90 335.9 240 67.5
Solyc09g090750.3 Solanum lycopersicum HOM05D006155 ORTHO05D007529 3.1e-90 335.9 238 64.3
arahy.Tifrunner.gnm1.ann1.L647M7 Arachis hypogaea HOM05D006155 ORTHO05D007529 4.0e-90 335.5 217 71.4
Aqoxy2G03758 Aquilegia oxysepala HOM05D006155 ORTHO05D007529 5.3e-90 335.1 217 70.5
Thhalv10017161m.g Eutrema salsugineum HOM05D006155 ORTHO05D007529 5.3e-90 335.1 231 66.2
PGSC0003DMG400001560 Solanum tuberosum HOM05D006155 ORTHO05D007529 6.9e-90 334.7 214 70.1
Carub.0004s1472 Capsella rubella HOM05D006155 ORTHO05D007529 1.2e-89 334.0 230 67.4
Ah.13g074940 Amaranthus hybridus HOM05D006155 ORTHO05D007529 1.5e-89 333.6 236 66.9
AL4G28890 Arabidopsis lyrata HOM05D006155 ORTHO05D007529 2.0e-89 333.2 230 67.0
MSTRG.24647 Avicennia marina HOM05D006155 ORTHO05D007529 1.0e-88 330.9 215 68.4
Lalb_Chr02g0150741 Lupinus albus HOM05D006155 ORTHO05D007529 1.0e-88 330.9 250 63.2
Rhsim09G0042400 Rhododendron simsii HOM05D006155 ORTHO05D007529 1.0e-88 330.9 234 67.5
Glyma.20G199100 Glycine max HOM05D006155 ORTHO05D007529 1.7e-88 330.1 217 70.5
HanXRQChr01g0022501 Helianthus annuus HOM05D006155 ORTHO05D007529 1.7e-88 330.1 258 60.9
CSS0040589 Camellia sinensis var. sinensis HOM05D006155 ORTHO05D007529 2.2e-88 329.7 243 64.6
Glyma.10G191200 Glycine max HOM05D006155 ORTHO05D007529 2.2e-88 329.7 233 67.0
PSO063G0276 Papaver somniferum HOM05D006155 ORTHO05D007529 2.9e-88 329.3 233 66.5
CARHR127260 Cardamine hirsuta HOM05D006155 ORTHO05D007529 4.9e-88 328.6 231 66.2
Migut.N00320 Erythranthe guttata HOM05D006155 ORTHO05D007529 4.9e-88 328.6 211 69.7
Duzib212G0768 Durio zibethinus HOM05D006155 ORTHO05D007529 6.5e-88 328.2 219 68.9
Oeu055271.1 Olea europaea HOM05D006155 ORTHO05D007529 8.4e-88 327.8 230 65.7
Oeu023143.1 Olea europaea HOM05D006155 ORTHO05D007529 1.4e-87 327.0 214 67.8
Ca_09794_v3 Cicer arietinum L. HOM05D006155 ORTHO05D007529 3.2e-87 325.9 227 65.6
FAN17G0987 Fragaria x ananassa HOM05D006155 ORTHO05D007529 5.5e-87 325.1 241 65.1
FAN22G1742 Fragaria x ananassa HOM05D006155 ORTHO05D007529 1.6e-86 323.6 248 62.5
Medtr1g073140 Medicago truncatula HOM05D006155 ORTHO05D007529 3.5e-86 322.4 239 63.2
Cc03_g06750 Coffea canephora HOM05D006155 ORTHO05D007529 4.6e-86 322.0 244 61.5
TPR.G18563 Trifolium pratense HOM05D006155 ORTHO05D007529 6.0e-86 321.6 217 68.2
Lj5g0009281 Lotus japonicus HOM05D006155 ORTHO05D007529 1.8e-85 320.1 212 69.3
Phvul.L001872 Phaseolus vulgaris HOM05D006155 ORTHO05D007529 3.0e-85 319.3 215 67.4
VMungo0720G0761 Vigna mungo HOM05D006155 ORTHO05D007529 3.9e-85 318.9 217 68.2
CDE02G2305 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 3.3e-84 315.8 217 68.2
Peaxi162Scf00125g01318 Petunia axillaris HOM05D006155 ORTHO05D007529 3.3e-84 315.8 234 64.5
ECA248G1656 Erigeron canadensis HOM05D006155 ORTHO05D007529 8.2e-83 311.2 208 66.3
Nn3g19816 Nelumbo nucifera HOM05D006155 ORTHO05D007529 1.8e-82 310.1 205 68.3
Os02g0816100 Oryza sativa ssp. japonica HOM05D006155 ORTHO05D007529 1.8e-82 310.1 234 63.2
Hund20478 Selenicereus undatus HOM05D006155 ORTHO05D007529 2.0e-81 306.6 204 68.6
unitig_899.g15552 Utricularia gibba HOM05D006155 ORTHO05D007529 2.2e-80 303.1 288 53.8
vmacro00537 Vaccinium macrocarpon HOM05D006155 ORTHO05D007529 1.6e-78 297.0 359 46.0
HPP92_007421 Vanilla planifolia HOM05D006155 ORTHO05D007529 9.7e-76 287.7 201 65.7
ATR0787G199 Amborella trichopoda HOM05D006155 ORTHO05D007529 2.6e-73 279.6 206 64.1
MBI07_g08907_MAGBIO Magnolia biondii HOM05D006155 ORTHO05D007529 3.8e-72 275.8 179 70.9
Cpa.g.sc3.348 Carica papaya HOM05D006155 ORTHO05D007529 1.1e-71 274.2 178 71.9
Sc04g0004680 Simmondsia chinensis HOM05D006155 ORTHO05D007529 4.4e-68 262.3 202 61.4
SMO165G0032 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 2.2e-64 250.0 220 55.0
Pp3c17_6550 Physcomitrium patens HOM05D006155 ORTHO05D007529 2.5e-63 246.5 228 52.6
CDE01G0085 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 7.9e-62 241.5 217 55.8
Pp3c2_6750 Physcomitrium patens HOM05D006155 ORTHO05D007529 7.4e-60 235.0 217 49.8
TAR365G0649 Trochodendron aralioides HOM05D006155 ORTHO05D007529 4.8e-51 205.7 143 69.2
LjContig00022g0011299 Lotus japonicus HOM05D006155 ORTHO05D007529 1.0e-48 198.0 179 57.5
Psat6g138760 Pisum sativum HOM05D006155 ORTHO05D007529 5.7e-44 182.2 130 66.2
MCO11G090 Micromonas commoda HOM05D006155 ORTHO05D007529 4.8e-43 179.1 230 43.0
CiPaw.01G175800 Carya illinoinensis HOM05D006155 ORTHO05D007529 1.8e-42 177.2 101 77.2
Cre03.g193000 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 6.8e-37 158.7 211 41.7
SMO115G0208 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 6.3e-35 152.1 210 39.5
QL06p021877 Quercus lobata HOM05D006155 ORTHO05D007529 1.6e-33 147.5 97 71.1
Hma1.2p1_0042F.1_g025660 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 5.6e-31 139.0 96 68.8
Hma1.2p1_0144F.1_g065125 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 5.6e-31 139.0 96 68.8
Zm00001eb191500 Zea mays HOM05D006155 ORTHO05D007529 8.0e-30 135.2 107 63.6
SGA_v2.0_scaffold31G12610 Striga asiatica HOM05D006155 ORTHO05D007529 2.3e-29 133.7 210 37.1
Rhsim09G0043000 Rhododendron simsii HOM05D006155 ORTHO05D007529 5.2e-29 132.5 100 63.0
AUR62035887 Chenopodium quinoa HOM05D006155 ORTHO05D007529 1.2e-28 131.3 95 65.3
SEGI_12787 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 8.3e-27 125.2 117 55.6
Lj5g0004239 Lotus japonicus HOM05D006155 ORTHO05D007529 5.9e-25 119.0 150 46.7
Lj5g0006737 Lotus japonicus HOM05D006155 ORTHO05D007529 5.9e-25 119.0 150 46.7
Rhsim09G0041400 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.3e-21 107.1 79 63.3
SEGI_32209 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 8.9e-21 105.1 82 61.0
Actinidia37388 Actinidia chinensis HOM05D006155 ORTHO05D007529 2.4e-18 97.1 62 69.4
Rhsim09G0048000 Rhododendron simsii HOM05D000029 ORTHO05D002162 5.4e-18 95.9 83 57.8
Cre01.g025100 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 1.6e-17 94.4 171 32.7
SGA_v2.0_scaffold31G12618 Striga asiatica HOM05D006155 ORTHO05D007529 5.6e-15 85.9 188 32.4
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 1.1e-13 81.6 208 30.3
SalBow7G2104 Salvia bowleyana HOM05D000708 ORTHO05D001418 2.6e-12 77.0 48 68.8
C09p23060 Brassica napus HOM05D006155 ORTHO05D007529 9.8e-12 75.1 55 67.3
AUR62035886 Chenopodium quinoa HOM05D006155 ORTHO05D007529 2.2e-11 73.9 55 60.0
Lj9A549T50 Lonicera japonica HOM05D002689 ORTHO05D003129 5.6e-07 59.3 196 25.5


User provided reference genes

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