Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2735.7 1383 100.0
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2659.4 1383 96.4
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2656.3 1383 96.0
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2654.0 1383 96.0
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2547.7 1385 91.6
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2541.9 1383 91.2
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2541.9 1384 91.3
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2539.6 1383 90.7
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2534.2 1384 90.9
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2531.1 1388 90.9
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2528.4 1388 90.8
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2527.7 1385 90.2
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2526.1 1384 90.8
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2521.5 1386 90.6
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2520.0 1384 90.4
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2518.8 1383 90.5
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2517.3 1384 90.2
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2517.3 1383 90.2
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2516.9 1385 90.3
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2516.1 1383 89.4
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2514.6 1383 90.2
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2514.2 1384 89.9
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2512.3 1385 89.5
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2511.5 1384 89.7
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2510.3 1383 90.2
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2509.9 1399 89.5
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2506.5 1383 89.2
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2506.5 1384 90.2
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2504.9 1384 89.5
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2504.9 1398 89.3
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2501.9 1384 89.9
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2499.5 1382 89.8
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2498.4 1384 90.1
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2498.4 1382 89.4
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2496.8 1383 90.2
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2496.5 1383 89.4
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2496.1 1383 89.9
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2492.6 1384 89.5
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2489.1 1383 88.5
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2487.6 1383 89.2
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2487.2 1383 89.0
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2486.8 1384 88.6
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2486.8 1383 88.9
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2486.1 1384 88.9
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2484.5 1383 89.1
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2483.8 1384 89.2
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2483.0 1386 88.9
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2479.9 1384 89.1
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2479.1 1384 88.6
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2476.4 1383 88.5
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2475.3 1384 88.3
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2473.7 1384 89.0
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2473.0 1383 88.5
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2472.2 1383 88.4
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2469.1 1383 88.4
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2469.1 1383 88.4
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2466.8 1383 88.8
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2464.5 1383 88.2
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2464.5 1383 88.2
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2463.0 1385 88.3
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2458.3 1384 87.8
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2457.2 1384 87.7
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2454.5 1410 86.7
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2450.6 1383 88.9
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2448.7 1385 87.0
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2444.5 1395 87.0
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2443.3 1385 87.4
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2442.9 1385 87.4
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2439.5 1386 87.7
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2439.1 1386 86.7
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2437.1 1335 90.0
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2434.8 1383 87.8
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2428.3 1385 86.7
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2426.0 1385 86.7
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2425.6 1385 86.6
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2418.3 1355 88.2
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2416.0 1385 87.1
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2414.0 1384 86.8
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2411.3 1384 87.2
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2411.3 1385 86.9
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2410.9 1446 83.0
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2408.6 1385 86.9
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2400.2 1385 86.6
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2397.1 1385 86.4
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2394.4 1385 86.3
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2386.7 1385 86.1
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2377.1 1385 85.6
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2376.7 1385 85.6
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2375.5 1385 85.6
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2375.1 1386 85.6
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2375.1 1386 85.6
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2359.3 1384 85.3
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2358.9 1385 85.1
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2354.3 1387 85.1
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2341.6 1383 84.8
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2340.1 1340 85.5
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2324.7 1409 83.6
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2290.8 1331 83.5
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2290.4 1259 89.8
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2279.2 1258 90.1
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2252.6 1262 88.7
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2198.3 1343 82.4
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2192.5 1347 79.4
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2185.6 1333 80.4
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2179.1 1341 78.7
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2165.2 1348 78.9
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2165.2 1348 78.9
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2154.0 1332 78.6
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1976.8 1121 87.4
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1972.2 1381 74.7
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1954.1 1109 87.4
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1911.7 1401 73.0
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1909.0 1334 70.4
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1859.7 1346 68.1
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1701.8 913 92.0
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1682.5 914 89.9
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1625.9 898 89.4
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1497.6 808 90.8
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1492.6 809 90.7
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1152.9 690 84.1
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1115.1 675 81.8
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 4.1e-305 1052.0 669 79.4
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 1.8e-300 1036.6 571 88.1
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 1.6e-264 917.1 1202 44.6
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 3.6e-261 906.0 589 77.4
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.3e-234 817.8 472 87.3
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 5.4e-233 812.4 472 86.7
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 2.4e-228 797.0 472 85.2
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 3.9e-215 753.1 473 82.0
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 3.3e-206 723.4 398 88.7
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 4.4e-174 616.7 1403 32.4
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 1.1e-161 575.5 1487 29.6
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 4.7e-112 410.6 1279 28.4
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 8.7e-90 336.7 175 94.9
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 8.8e-66 256.9 147 85.0
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.5e-60 239.6 123 94.3
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 3.5e-46 191.8 107 89.7
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 2.8e-40 172.2 174 56.3
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 1.6e-30 139.8 139 51.8
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 1.9e-28 132.9 99 69.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 4.7e-27 128.3 91 72.5
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 3.3e-20 105.5 60 86.7


User provided reference genes

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