Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 1.4e-28 129.0 71 100.0
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 1.3e-18 95.9 69 75.4
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 1.1e-15 86.3 68 67.6
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 2.3e-15 85.1 67 67.2
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 2.3e-15 85.1 69 72.5
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 5.2e-15 84.0 70 62.9
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 5.2e-15 84.0 70 62.9
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 8.9e-15 83.2 68 66.2
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 8.9e-15 83.2 68 66.2
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 2.6e-14 81.6 66 68.2
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.6e-14 81.6 67 65.7
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 4.4e-14 80.9 70 65.7
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.8e-14 80.5 70 64.3
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.8e-14 80.5 70 64.3
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 5.8e-14 80.5 70 67.1
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 5.8e-14 80.5 72 70.8
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 5.8e-14 80.5 70 67.1
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 9.9e-14 79.7 70 65.7
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.3e-13 79.3 70 65.7
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.7e-13 79.0 70 65.7
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.2e-13 78.6 71 63.4
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.9e-13 78.2 68 66.2
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 2.9e-13 78.2 69 66.7
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 3.7e-13 77.8 70 61.4
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.1e-12 76.3 71 67.6
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.1e-12 76.3 70 64.3
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.4e-12 75.9 71 63.4
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 1.4e-12 75.9 73 61.6
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 2.4e-12 75.1 67 65.7
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 2.4e-12 75.1 67 67.2
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.1e-12 74.3 75 60.0
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 5.4e-12 73.9 67 64.2
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.4e-12 73.9 70 62.9
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 7.1e-12 73.6 74 56.8
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 7.1e-12 73.6 67 65.7
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 9.2e-12 73.2 74 56.8
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 9.2e-12 73.2 75 61.3
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 9.2e-12 73.2 71 59.2
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 1.2e-11 72.8 67 62.7
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.6e-11 72.4 67 56.7
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 2.1e-11 72.0 70 58.6
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.1e-11 72.0 70 61.4
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 2.1e-11 72.0 69 62.3
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.7e-11 71.6 74 58.1
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 3.5e-11 71.2 70 55.7
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 4.6e-11 70.9 74 60.8
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 4.6e-11 70.9 74 60.8
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 7.8e-11 70.1 68 58.8
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 1.3e-10 69.3 67 59.7
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.7e-10 68.9 62 64.5
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.3e-10 68.6 68 61.8
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.3e-10 68.6 69 56.5
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.0e-10 68.2 67 58.2
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 5.1e-10 67.4 64 60.9
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 6.6e-10 67.0 67 59.7
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 1.1e-09 66.2 73 56.2
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 2.5e-09 65.1 85 45.9
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 2.5e-09 65.1 77 54.5
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 3.3e-09 64.7 85 44.7
MELO3C023781.2 Cucumis melo HOM05D001568 ORTHO05D004404 4.3e-09 64.3 67 61.2
Ah.10g037380 Amaranthus hybridus HOM05D001568 ORTHO05D004404 7.3e-09 63.5 70 52.9
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 7.3e-09 63.5 60 61.7
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 1.2e-08 62.8 85 43.5
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 1.2e-08 62.8 70 57.1
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 2.1e-08 62.0 67 56.7
BolC6t39129H Brassica oleracea HOM05D001568 ORTHO05D004404 2.8e-08 61.6 82 42.7
A07p33830 Brassica napus HOM05D001568 ORTHO05D004404 3.6e-08 61.2 83 42.2
BraA07t31009Z Brassica rapa HOM05D001568 ORTHO05D004404 3.6e-08 61.2 83 42.2
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.6e-08 61.2 40 70.0
C06p43090 Brassica napus HOM05D001568 ORTHO05D004404 4.7e-08 60.8 84 41.7
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 6.2e-08 60.5 89 41.6
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 3.1e-07 58.2 41 65.9
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 5.2e-07 57.4 87 42.5
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 5.2e-07 57.4 87 42.5
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 8.9e-07 56.6 65 46.2
CiPaw.03G006700 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.2e-06 56.2 63 58.7
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 3.4e-06 54.7 85 41.2
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 5.8e-06 53.9 85 41.2
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 5.8e-06 53.9 65 47.7
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 5.8e-06 53.9 59 52.5
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 7.6e-06 53.5 54 50.0


User provided reference genes

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