Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003722 Sechium edule HOM05D007341 ORTHO05D009075 4.4e-76 288.1 171 100.0
MELO3C019561.2 Cucumis melo HOM05D007341 ORTHO05D009075 1.1e-63 246.9 173 85.0
CsaV3_3G018050 Cucumis sativus L. HOM05D007341 ORTHO05D009075 4.0e-61 238.4 173 85.5
ClCG05G010440 Citrullus lanatus HOM05D007341 ORTHO05D009075 9.2e-50 200.7 157 83.4
Cfa002160 Carpinus fangiana HOM05D007341 ORTHO05D009075 3.9e-48 195.3 98 89.8
CiPaw.01G092200 Carya illinoinensis HOM05D007341 ORTHO05D009075 1.1e-47 193.7 94 93.6
Haze_16246 Corylus avellana HOM05D007341 ORTHO05D009075 2.5e-47 192.6 94 92.6
Prupe.3G028000 Prunus persica HOM05D007341 ORTHO05D009075 3.3e-47 192.2 98 89.8
QL05p085130 Quercus lobata HOM05D007341 ORTHO05D009075 5.6e-47 191.4 97 88.7
GSVIVG01029444001 Vitis vinifera HOM05D007341 ORTHO05D009075 5.6e-47 191.4 98 90.8
TWI12G0959 Tripterygium wilfordii HOM05D007341 ORTHO05D009075 1.1e-45 187.2 98 87.8
RcHm_v2.0_Chr2g0148351 Rosa chinensis HOM05D007341 ORTHO05D009075 1.4e-45 186.8 98 85.7
FvH4_6g36350 Fragaria vesca HOM05D007341 ORTHO05D009075 3.1e-45 185.7 98 84.7
FAN02G2832 Fragaria x ananassa HOM05D007341 ORTHO05D009075 3.1e-45 185.7 98 84.7
MD09G1169800 Malus domestica HOM05D007341 ORTHO05D009075 3.1e-45 185.7 98 85.7
Ciclev10029418m.g Citrus clementina HOM05D007341 ORTHO05D009075 1.5e-44 183.3 99 81.8
Duzib235G0177 Durio zibethinus HOM05D007341 ORTHO05D009075 1.5e-44 183.3 100 84.0
FAN09G2851 Fragaria x ananassa HOM05D007341 ORTHO05D009075 1.5e-44 183.3 98 83.7
Gohir.A05G116700 Gossypium hirsutum HOM05D007341 ORTHO05D009075 3.4e-44 182.2 100 83.0
Gorai.009G121500 Gossypium raimondii HOM05D007341 ORTHO05D009075 3.4e-44 182.2 100 83.0
Gohir.D05G117600 Gossypium hirsutum HOM05D007341 ORTHO05D009075 5.8e-44 181.4 100 82.0
Sabra07G0002700 Salix brachista HOM05D007341 ORTHO05D009075 5.8e-44 181.4 97 88.7
Dinv20313 Davidia involucrata HOM05D007341 ORTHO05D009075 9.9e-44 180.6 94 89.4
CSS0015626 Camellia sinensis var. sinensis HOM05D007341 ORTHO05D009075 1.3e-43 180.3 99 83.8
Cc06_g16890 Coffea canephora HOM05D007341 ORTHO05D009075 2.2e-43 179.5 104 81.7
Potri.007G003600 Populus trichocarpa HOM05D007341 ORTHO05D009075 2.9e-43 179.1 97 87.6
Eucgr.F04060 Eucalyptus grandis HOM05D007341 ORTHO05D009075 4.9e-43 178.3 94 86.2
HanXRQChr03g0072101 Helianthus annuus HOM05D007341 ORTHO05D009075 1.1e-42 177.2 100 82.0
Nitab4.5_0000349g0220 Nicotiana tabacum HOM05D007341 ORTHO05D009075 1.1e-42 177.2 100 81.0
Thecc.06G049400 Theobroma cacao HOM05D007341 ORTHO05D009075 1.1e-42 177.2 100 82.0
Lsat_1_v5_gn_9_114620 Lactuca sativa HOM05D007341 ORTHO05D009075 3.2e-42 175.6 100 81.0
Hma1.2p1_0422F.1_g150100 Hydrangea macrophylla HOM05D007341 ORTHO05D009075 4.2e-42 175.3 100 83.0
CANSAT01G1666 Cannabis sativa HOM05D007341 ORTHO05D009075 5.4e-42 174.9 94 81.9
ECA240G2002 Erigeron canadensis HOM05D007341 ORTHO05D009075 9.3e-42 174.1 100 80.0
TAR636G1203 Trochodendron aralioides HOM05D007341 ORTHO05D009075 1.2e-41 173.7 94 86.2
PGR102G3137 Punica granatum HOM05D007341 ORTHO05D009075 1.6e-41 173.3 99 80.8
PGSC0003DMG400019203 Solanum tuberosum HOM05D007341 ORTHO05D009075 1.6e-41 173.3 97 80.4
Solyc10g086470.2 Solanum lycopersicum HOM05D007341 ORTHO05D009075 2.1e-41 172.9 100 78.0
Sopen10g035850 Solanum pennellii HOM05D007341 ORTHO05D009075 2.1e-41 172.9 100 78.0
DCAR_027600 Daucus carota HOM05D007341 ORTHO05D009075 4.6e-41 171.8 94 80.9
Glyma.15G000400 Glycine max HOM05D007341 ORTHO05D009075 6.0e-41 171.4 88 87.5
THA.LOC104808109 Tarenaya hassleriana HOM05D007341 ORTHO05D009075 6.0e-41 171.4 95 83.2
Phvul.005G082000 Phaseolus vulgaris HOM05D007341 ORTHO05D009075 2.5e-39 166.0 88 84.1
MSTRG.26115 Avicennia marina HOM05D007341 ORTHO05D009075 5.6e-39 164.9 96 82.3
Medtr6g004140 Medicago truncatula HOM05D007341 ORTHO05D009075 7.3e-39 164.5 99 77.8
Aqoxy7G02561 Aquilegia oxysepala HOM05D007341 ORTHO05D009075 2.1e-38 162.9 100 76.0
unitig_748.g7237 Utricularia gibba HOM05D007341 ORTHO05D009075 3.6e-38 162.2 96 79.2
BcaC08g45393 Brassica carinata HOM05D007341 ORTHO05D009075 8.1e-38 161.0 98 78.6
A07p27380 Brassica napus HOM05D007341 ORTHO05D009075 8.1e-38 161.0 98 78.6
C06p30240 Brassica napus HOM05D007341 ORTHO05D009075 8.1e-38 161.0 98 78.6
BolC6t38187H Brassica oleracea HOM05D007341 ORTHO05D009075 8.1e-38 161.0 98 78.6
BraA07t30379Z Brassica rapa HOM05D007341 ORTHO05D009075 8.1e-38 161.0 98 78.6
CARHR072660 Cardamine hirsuta HOM05D007341 ORTHO05D009075 1.8e-37 159.8 98 77.6
Migut.K00075 Erythranthe guttata HOM05D007341 ORTHO05D009075 2.4e-37 159.5 95 78.9
BcaB02g07190 Brassica carinata HOM05D007341 ORTHO05D009075 4.0e-37 158.7 98 77.6
Thhalv10019269m.g Eutrema salsugineum HOM05D007341 ORTHO05D009075 4.0e-37 158.7 98 77.6
AL2G39450 Arabidopsis lyrata HOM05D007341 ORTHO05D009075 5.3e-37 158.3 98 77.6
AUR62001305 Chenopodium quinoa HOM05D007341 ORTHO05D009075 5.3e-37 158.3 100 77.0
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 5.3e-37 158.3 94 80.9
Lalb_Chr24g0392671 Lupinus albus HOM05D007341 ORTHO05D009075 5.3e-37 158.3 92 79.3
AT1G78995 Arabidopsis thaliana HOM05D007341 ORTHO05D009075 6.9e-37 157.9 98 76.5
Carub.0002s2586 Capsella rubella HOM05D007341 ORTHO05D009075 6.9e-37 157.9 98 76.5
AUR62025687 Chenopodium quinoa HOM05D007341 ORTHO05D009075 6.9e-37 157.9 100 76.0
CDE05G1356 Ceratophyllum demersum HOM05D007341 ORTHO05D009075 9.0e-37 157.5 98 76.5
Sp5g34040 Schrenkiella parvula HOM05D007341 ORTHO05D009075 9.0e-37 157.5 98 76.5
EL10Ac7g18105 Beta vulgaris HOM05D007341 ORTHO05D009075 2.2e-35 152.9 99 73.7
Actinidia38822 Actinidia chinensis HOM05D007341 ORTHO05D009075 3.8e-35 152.1 105 75.2
Mapoly0061s0126 Marchantia polymorpha HOM05D007341 ORTHO05D009075 2.4e-34 149.4 94 72.3
Pp3c15_22740 Physcomitrium patens HOM05D007341 ORTHO05D009075 2.4e-34 149.4 94 73.4
HPP92_026441 Vanilla planifolia HOM05D007341 ORTHO05D009075 7.1e-34 147.9 94 73.4
Hund18551 Selenicereus undatus HOM05D007341 ORTHO05D009075 2.1e-33 146.4 98 71.4
SGA_v2.0_scaffold94G28462 Striga asiatica HOM05D007341 ORTHO05D009075 7.8e-33 144.4 95 73.7
Zm00001eb227230 Zea mays HOM05D007341 ORTHO05D009075 1.7e-32 143.3 94 70.2
Cpa.g.sc4293.1 Carica papaya HOM05D007341 ORTHO05D009075 2.3e-32 142.9 74 86.5
ATR0626G096 Amborella trichopoda HOM05D007341 ORTHO05D009075 3.9e-32 142.1 94 73.4
FAN14G2925 Fragaria x ananassa HOM05D007341 ORTHO05D009075 8.7e-32 141.0 98 70.4
FAN14G4935 Fragaria x ananassa HOM05D007341 ORTHO05D009075 8.7e-32 141.0 98 70.4
PSO063G2737 Papaver somniferum HOM05D007341 ORTHO05D009075 5.6e-31 138.3 93 71.0
VMungo1080G1509 Vigna mungo HOM05D007341 ORTHO05D009075 5.6e-31 138.3 74 83.8
PSO170G4447 Papaver somniferum HOM05D007341 ORTHO05D009075 9.6e-31 137.5 93 71.0
Nn8g41280 Nelumbo nucifera HOM05D007341 ORTHO05D009075 2.8e-30 136.0 74 83.8
SMO232G0085 Selaginella moellendorffii HOM05D007341 ORTHO05D009075 3.1e-29 132.5 94 67.0
Nitab4.5_0001911g0010 Nicotiana tabacum HOM05D007341 ORTHO05D009075 5.3e-29 131.7 100 66.0
DCAR_011722 Daucus carota HOM05D007341 ORTHO05D009075 6.9e-29 131.3 92 63.0
Sc16g0003760 Simmondsia chinensis HOM05D007341 ORTHO05D009075 8.4e-27 124.4 79 78.5
Os06g0704200 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 3.2e-26 122.5 92 65.2
Sabra14G0002900 Salix brachista HOM05D007341 ORTHO05D009075 2.1e-25 119.8 89 67.4
C02p36120 Brassica napus HOM05D007341 ORTHO05D009075 5.6e-23 111.7 66 77.3
Peaxi162Scf00330g00029 Petunia axillaris HOM05D007341 ORTHO05D009075 1.1e-21 107.5 112 56.2
Manes.06G177800 Manihot esculenta HOM05D007341 ORTHO05D009075 4.0e-21 105.5 71 66.2
Rhsim08G0252300 Rhododendron simsii HOM05D000912 ORTHO05D009075 1.2e-20 104.0 63 84.1
vmacro18722 Vaccinium macrocarpon HOM05D007341 ORTHO05D009075 1.2e-20 104.0 90 62.2
Aa31LG4G1990 Aethionema arabicum HOM05D007341 ORTHO05D009075 2.2e-19 99.8 64 75.0
Cre01.g000800 Chlamydomonas reinhardtii HOM05D007341 ORTHO05D009075 2.2e-19 99.8 90 47.8
Oeu004021.1 Olea europaea HOM05D007341 ORTHO05D009075 8.4e-19 97.8 61 78.7
Psat6g000680 Pisum sativum HOM05D007341 ORTHO05D009075 4.2e-18 95.5 66 71.2
Lj9A544T49 Lonicera japonica HOM05D007341 ORTHO05D009075 2.7e-17 92.8 66 74.2
MCO04G269 Micromonas commoda HOM05D007341 ORTHO05D009075 2.7e-17 92.8 89 44.9
Os02g0138100 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 4.6e-17 92.0 82 56.1
SalBow1G8719 Salvia bowleyana HOM05D007341 ORTHO05D009075 2.3e-16 89.7 85 56.5
SalBow1G7986 Salvia bowleyana HOM05D007341 ORTHO05D009075 2.5e-15 86.3 62 67.7
Ah.08g218010 Amaranthus hybridus HOM05D007341 ORTHO05D009075 4.8e-14 82.0 103 48.5
AagrBONN_evm.TU.Sc2ySwM_368.1307 Anthoceros agrestis HOM05D007341 ORTHO05D009075 1.1e-13 80.9 60 66.7
MBI13_g34919_MAGBIO Magnolia biondii HOM05D007341 ORTHO05D009075 1.8e-13 80.1 54 77.8
PRCOL_00000561 Prasinoderma coloniale HOM05D007341 ORTHO05D009075 4.5e-12 75.5 87 43.7
Zm00001eb231900 Zea mays HOM05D007341 ORTHO05D009075 7.9e-09 64.7 115 36.5


User provided reference genes

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