Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 1.3e-67 260.0 177 100.0
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 6.2e-57 224.6 177 89.3
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 5.2e-56 221.5 177 88.7
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 1.6e-52 209.9 179 83.8
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 2.7e-52 209.1 174 83.9
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 3.5e-52 208.8 174 83.9
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 7.8e-52 207.6 176 83.5
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 7.8e-52 207.6 174 75.9
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 1.3e-51 206.8 174 84.5
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 1.7e-51 206.5 174 80.5
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 3.0e-51 205.7 176 80.1
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 3.9e-51 205.3 179 79.9
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 3.9e-51 205.3 174 83.9
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 3.9e-51 205.3 174 83.3
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 5.1e-51 204.9 176 79.5
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 1.1e-50 203.8 176 76.7
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.1e-50 203.8 179 81.0
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 1.1e-50 203.8 174 81.6
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 1.1e-50 203.8 180 58.9
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.5e-50 203.4 176 60.8
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 1.5e-50 203.4 175 74.9
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.9e-50 203.0 174 82.8
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 1.9e-50 203.0 174 82.8
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 2.5e-50 202.6 174 80.5
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 2.5e-50 202.6 174 82.2
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 3.3e-50 202.2 179 79.9
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 3.3e-50 202.2 174 82.2
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 4.3e-50 201.8 178 80.3
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 5.6e-50 201.4 174 81.6
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 5.6e-50 201.4 174 79.9
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 7.3e-50 201.1 179 78.8
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 9.6e-50 200.7 174 78.2
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 1.2e-49 200.3 179 81.0
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 1.6e-49 199.9 179 77.7
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 1.6e-49 199.9 179 76.0
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 1.6e-49 199.9 177 83.1
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 2.1e-49 199.5 174 82.2
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 2.8e-49 199.1 174 78.7
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 3.6e-49 198.7 179 79.3
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 6.2e-49 198.0 181 78.5
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 1.1e-48 197.2 174 79.9
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 1.4e-48 196.8 174 81.0
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.4e-48 196.8 176 78.4
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 1.4e-48 196.8 176 78.4
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 1.8e-48 196.4 174 81.0
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 1.8e-48 196.4 174 78.2
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 1.8e-48 196.4 179 77.7
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 1.8e-48 196.4 176 80.7
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 3.1e-48 195.7 179 77.7
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.1e-48 195.7 174 79.9
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 4.0e-48 195.3 176 77.3
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 5.2e-48 194.9 173 83.2
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 6.8e-48 194.5 179 77.1
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 8.9e-48 194.1 179 77.1
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 1.2e-47 193.7 176 78.4
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 1.5e-47 193.4 174 80.5
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.6e-47 192.6 176 80.1
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 9.9e-47 190.7 172 78.5
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 2.2e-46 189.5 176 79.0
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 2.2e-46 189.5 179 77.1
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 2.2e-46 189.5 176 79.5
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 2.9e-46 189.1 174 77.0
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 4.9e-46 188.3 199 52.8
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 8.4e-46 187.6 176 76.7
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 1.1e-45 187.2 180 75.0
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 1.4e-45 186.8 176 79.0
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 1.9e-45 186.4 176 77.8
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 3.2e-45 185.7 176 55.7
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 4.2e-45 185.3 174 78.2
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 9.3e-45 184.1 174 57.5
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 9.3e-45 184.1 179 76.5
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 9.3e-45 184.1 174 76.4
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 1.6e-44 183.3 155 83.2
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 2.7e-44 182.6 176 76.7
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 4.6e-44 181.8 174 79.3
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 7.8e-44 181.0 174 75.9
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 1.7e-43 179.9 252 44.0
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 3.0e-43 179.1 175 76.6
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 3.9e-43 178.7 189 51.3
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 6.6e-43 177.9 176 54.5
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 1.1e-42 177.2 179 74.9
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 3.3e-42 175.6 174 75.9
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 4.3e-42 175.3 176 54.0
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 4.3e-42 175.3 176 54.0
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 1.3e-41 173.7 194 48.5
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 6.2e-41 171.4 174 74.7
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 3.4e-39 165.6 175 72.6
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 5.8e-39 164.9 174 71.8
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 7.6e-39 164.5 141 89.4
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 1.7e-38 163.3 192 70.3
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 2.9e-38 162.5 145 82.8
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 2.9e-38 162.5 175 49.1
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 3.8e-38 162.2 204 58.8
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 4.9e-38 161.8 151 51.7
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 1.2e-36 157.1 174 45.4
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 2.7e-36 156.0 176 45.5
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.0e-35 154.1 172 50.6
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 6.6e-35 151.4 87 80.5
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 1.5e-34 150.2 173 50.9
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 2.1e-33 146.4 176 47.7
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 3.6e-33 145.6 177 64.4
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 2.4e-32 142.9 138 69.6
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.1e-32 142.5 84 75.0
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 6.9e-32 141.4 138 79.0
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 2.6e-31 139.4 174 66.1
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 3.4e-31 139.0 163 69.3
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 4.5e-31 138.7 154 73.4
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.7e-30 136.7 154 72.7
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 4.9e-30 135.2 165 64.8
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.4e-29 132.9 138 79.0
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 4.2e-29 132.1 88 70.5
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 5.1e-27 125.2 128 72.7
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 1.1e-24 117.5 87 62.1
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 3.1e-24 115.9 215 37.7
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 4.5e-23 112.1 119 52.9
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 2.5e-21 106.3 119 49.6
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 3.0e-19 99.4 165 38.8
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 3.0e-19 99.4 181 38.1
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 3.4e-15 85.9 116 40.5
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 1.9e-13 80.1 50 76.0
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 3.9e-11 72.4 96 40.6
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 2.0e-07 60.1 38 71.1
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.3e-06 57.4 36 69.4


User provided reference genes

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