Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 2.1e-126 455.7 230 100.0
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 6.1e-73 278.1 303 55.1
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 4.0e-72 275.4 313 52.7
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 8.6e-67 257.7 311 49.8
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 7.8e-52 208.0 293 45.4
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 2.3e-51 206.5 300 42.7
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 6.6e-51 204.9 302 43.4
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 1.9e-50 203.4 246 47.2
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 2.8e-49 199.5 278 44.6
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 4.7e-49 198.7 251 44.6
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 6.2e-49 198.4 304 41.4
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 8.0e-49 198.0 292 42.5
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.4e-48 197.2 307 41.4
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 3.1e-48 196.1 280 41.8
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 3.1e-48 196.1 293 43.3
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 3.1e-48 196.1 293 42.3
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 4.0e-48 195.7 249 46.2
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 4.0e-48 195.7 311 39.9
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 4.0e-48 195.7 249 45.4
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 5.2e-48 195.3 312 39.7
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 5.2e-48 195.3 312 39.7
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 6.8e-48 194.9 311 39.9
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 6.8e-48 194.9 311 39.5
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 8.9e-48 194.5 300 40.7
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 8.9e-48 194.5 293 43.0
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 2.0e-47 193.4 258 45.7
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 4.4e-47 192.2 313 39.0
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 5.8e-47 191.8 300 40.3
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 7.5e-47 191.4 254 45.3
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 7.5e-47 191.4 262 45.0
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 9.8e-47 191.0 256 43.4
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.3e-46 190.7 303 41.6
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 1.3e-46 190.7 265 43.0
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 8.3e-46 188.0 259 43.2
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 1.1e-45 187.6 253 45.5
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 1.1e-45 187.6 297 45.1
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 1.4e-45 187.2 274 42.3
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 1.4e-45 187.2 265 42.6
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 2.4e-45 186.4 298 40.9
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 2.4e-45 186.4 306 39.9
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 2.4e-45 186.4 281 41.6
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 3.2e-45 186.0 274 40.5
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 3.2e-45 186.0 257 43.2
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 3.2e-45 186.0 293 41.6
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 3.2e-45 186.0 303 39.3
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 5.4e-45 185.3 263 44.9
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 7.0e-45 184.9 258 42.6
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 6.0e-44 181.8 260 44.6
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 2.3e-43 179.9 321 37.1
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 5.1e-43 178.7 273 39.6
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 8.6e-43 177.9 282 40.4
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 1.1e-42 177.6 338 35.8
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 2.5e-42 176.4 314 37.9
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 3.3e-42 176.0 276 39.1
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 1.2e-41 174.1 274 44.2
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.8e-41 172.9 294 39.5
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 8.1e-41 171.4 253 41.1
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 2.3e-40 169.9 253 41.9
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 5.2e-40 168.7 235 42.1
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 5.2e-40 168.7 312 37.8
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 6.8e-40 168.3 257 41.2
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 6.8e-40 168.3 259 40.9
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 2.0e-39 166.8 298 37.6
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 3.4e-39 166.0 291 41.6
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 4.4e-39 165.6 233 42.1
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 5.8e-39 165.2 276 39.1
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 9.9e-39 164.5 310 41.0
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 9.9e-39 164.5 310 41.0
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 9.9e-39 164.5 310 41.0
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 1.3e-38 164.1 308 39.6
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 1.3e-38 164.1 257 40.5
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 1.3e-38 164.1 241 39.8
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 2.2e-38 163.3 275 37.8
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 2.9e-38 162.9 311 39.9
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 2.9e-38 162.9 209 45.5
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 6.4e-38 161.8 323 35.6
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.1e-37 161.0 258 45.0
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 1.1e-37 161.0 239 41.4
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 2.4e-37 159.8 202 43.6
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 3.2e-37 159.5 273 39.2
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 1.2e-36 157.5 260 41.2
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 1.2e-36 157.5 279 40.1
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 1.6e-36 157.1 280 37.1
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 3.5e-36 156.0 238 40.8
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 4.6e-36 155.6 315 35.6
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 1.3e-35 154.1 271 38.4
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 5.1e-35 152.1 259 40.9
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 8.6e-35 151.4 232 42.7
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.1e-34 151.0 242 41.3
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 1.1e-34 151.0 218 42.7
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 2.5e-34 149.8 322 37.3
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 2.5e-34 149.8 167 49.1
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 5.6e-34 148.7 234 43.6
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 5.6e-34 148.7 166 49.4
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 9.5e-34 147.9 233 43.8
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 9.5e-34 147.9 225 40.0
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 1.2e-33 147.5 231 39.0
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 1.2e-33 147.5 267 42.7
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 2.1e-33 146.7 265 39.2
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 2.1e-33 146.7 286 37.8
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 2.8e-33 146.4 273 41.8
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 6.2e-33 145.2 201 44.8
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 8.1e-33 144.8 263 40.3
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 1.1e-32 144.4 210 40.0
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 3.1e-32 142.9 279 37.3
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 4.0e-32 142.5 227 41.9
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 5.2e-32 142.1 253 38.3
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 1.5e-31 140.6 239 37.2
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 2.0e-31 140.2 251 40.6
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 2.0e-31 140.2 265 38.1
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 3.4e-31 139.4 267 37.8
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 3.4e-31 139.4 300 38.0
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 4.4e-31 139.0 171 45.6
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 5.8e-31 138.7 301 37.9
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 1.3e-30 137.5 333 36.3
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 2.9e-30 136.3 255 39.6
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 4.9e-30 135.6 296 37.8
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 4.9e-30 135.6 296 37.8
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 6.4e-30 135.2 307 37.1
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 6.4e-30 135.2 296 37.8
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 6.4e-30 135.2 224 40.6
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 8.4e-30 134.8 240 38.8
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 8.4e-30 134.8 240 38.8
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 8.4e-30 134.8 240 38.8
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 8.4e-30 134.8 240 38.8
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 8.4e-30 134.8 265 34.7
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.1e-29 134.4 254 37.0
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.4e-29 134.0 325 35.4
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 2.4e-29 133.3 303 36.0
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 2.4e-29 133.3 196 39.8
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 4.2e-29 132.5 298 36.6
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 7.1e-29 131.7 302 36.1
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 1.2e-28 131.0 279 36.2
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 1.6e-28 130.6 264 38.3
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 7.8e-28 128.3 228 37.7
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 1.7e-27 127.1 255 36.5
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 3.0e-27 126.3 268 38.4
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 5.1e-27 125.6 270 37.4
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 1.9e-26 123.6 149 44.3
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 1.9e-26 123.6 264 37.5
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 1.9e-26 123.6 181 43.6
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 1.3e-25 120.9 248 37.5
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 1.3e-25 120.9 248 37.5
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 1.3e-25 120.9 248 37.5
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 1.6e-25 120.6 218 36.2
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 3.6e-25 119.4 128 49.2
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 8.1e-25 118.2 144 45.8
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 1.8e-24 117.1 265 36.6
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 2.4e-24 116.7 252 35.7
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 2.0e-23 113.6 265 36.2
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 9.9e-23 111.3 260 33.8
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 1.1e-21 107.8 303 34.0
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 2.4e-21 106.7 233 37.8
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 9.3e-21 104.8 369 29.0
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 9.3e-21 104.8 238 33.2
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 1.2e-20 104.4 262 35.1
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 1.2e-20 104.4 268 34.0
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.5e-18 97.4 275 34.2
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 1.3e-17 94.4 192 33.9
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 2.8e-17 93.2 382 27.0
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 1.2e-15 87.8 155 39.4
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 2.0e-15 87.0 270 29.6
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 7.6e-15 85.1 234 34.2
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 6.4e-14 82.0 256 29.3
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 8.4e-14 81.6 101 48.5
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 1.1e-13 81.3 199 34.7
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 5.1e-11 72.4 155 35.5
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 7.4e-10 68.6 132 37.1
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 8.1e-09 65.1 175 31.4
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 6.9e-08 62.0 275 26.5
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 6.9e-08 62.0 174 35.6
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 6.9e-08 62.0 196 29.1
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 2.0e-07 60.5 204 31.9
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 5.8e-07 58.9 69 44.9
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 7.6e-07 58.5 202 30.7
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 2.2e-06 57.0 154 29.9
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 2.2e-06 57.0 147 30.6
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 2.9e-06 56.6 197 29.4
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 3.8e-06 56.2 235 25.5
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 4.9e-06 55.8 197 29.4
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 8.4e-06 55.1 151 30.5
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 8.4e-06 55.1 121 33.9


User provided reference genes

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