Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 1.5e-198 696.4 492 100.0
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 1.1e-79 301.6 498 43.4
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 2.7e-62 243.8 211 69.2
MELO3C014385.2 Cucumis melo HOM05D005305 ORTHO05D006394 2.3e-61 240.7 229 62.0
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 2.3e-61 240.7 229 61.6
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 2.6e-36 157.5 173 53.2
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 2.6e-36 157.5 173 53.2
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 6.3e-35 152.9 182 50.0
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 3.2e-34 150.6 239 45.6
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 4.1e-34 150.2 192 50.0
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 5.9e-33 146.4 218 46.3
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 7.8e-33 146.0 210 44.8
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 3.9e-32 143.7 175 49.1
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 1.5e-31 141.7 237 44.3
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 2.5e-31 141.0 246 41.5
Glyma.08G183700 Glycine max HOM05D005305 ORTHO05D006394 2.5e-31 141.0 253 40.7
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 3.3e-31 140.6 247 41.3
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 2.1e-30 137.9 174 49.4
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 1.4e-29 135.2 179 45.8
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 1.8e-29 134.8 241 43.2
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 2.0e-28 131.3 214 42.1
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 4.4e-28 130.2 235 41.7
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 5.8e-28 129.8 161 47.2
Oeu000200.2 Olea europaea HOM05D005305 ORTHO05D006394 1.3e-27 128.6 248 40.3
HanXRQChr11g0337491 Helianthus annuus HOM05D005305 ORTHO05D006394 1.9e-26 124.8 185 43.2
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 1.9e-26 124.8 203 36.9
FAN13G2550 Fragaria x ananassa HOM05D005305 ORTHO05D006394 7.0e-26 122.9 212 38.7
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 9.2e-26 122.5 153 47.7
CiPaw.05G041500 Carya illinoinensis HOM05D005305 ORTHO05D006394 1.2e-25 122.1 190 42.6
FAN08G2621 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.2e-25 122.1 217 39.2
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 1.6e-25 121.7 199 46.2
RcHm_v2.0_Chr7g0223251 Rosa chinensis HOM05D005305 ORTHO05D006394 1.6e-25 121.7 208 40.4
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 2.0e-25 121.3 202 41.1
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 2.7e-25 120.9 193 40.9
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 4.6e-25 120.2 221 39.8
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 4.6e-25 120.2 188 41.0
Thecc.01G118700 Theobroma cacao HOM05D005305 ORTHO05D006394 6.0e-25 119.8 235 38.7
FvH4_5g29740 Fragaria vesca HOM05D005305 ORTHO05D006394 7.8e-25 119.4 216 39.4
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 1.0e-24 119.0 193 39.4
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 2.3e-24 117.9 193 40.4
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 2.3e-24 117.9 185 39.5
Gohir.D12G092500 Gossypium hirsutum HOM05D005305 ORTHO05D006394 2.3e-24 117.9 208 39.4
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 3.0e-24 117.5 193 38.9
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 3.0e-24 117.5 193 38.9
FAN04G1743 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.0e-24 117.5 266 34.6
Gorai.008G100000 Gossypium raimondii HOM05D005305 ORTHO05D006394 3.9e-24 117.1 201 39.3
Lsat_1_v5_gn_5_107520 Lactuca sativa HOM05D005305 ORTHO05D006394 3.9e-24 117.1 244 37.3
QL11p019060 Quercus lobata HOM05D005305 ORTHO05D006394 3.9e-24 117.1 239 38.9
Manes.13G081800 Manihot esculenta HOM05D005305 ORTHO05D006394 6.6e-24 116.3 215 36.7
COL.COLO4_22382 Corchorus olitorius HOM05D005305 ORTHO05D006394 1.5e-23 115.2 150 46.7
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 1.5e-23 115.2 159 42.8
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 1.9e-23 114.8 185 39.5
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 1.9e-23 114.8 192 39.1
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 1.9e-23 114.8 207 39.6
Atru.chr6.974 Acer truncatum HOM05D005305 ORTHO05D006394 2.5e-23 114.4 202 40.6
HanXRQChr10g0300271 Helianthus annuus HOM05D005305 ORTHO05D006394 2.5e-23 114.4 158 43.0
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 3.3e-23 114.0 204 36.3
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 3.3e-23 114.0 204 36.3
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 3.3e-23 114.0 204 36.3
Gohir.A11G210433 Gossypium hirsutum HOM05D005305 ORTHO05D006394 4.3e-23 113.6 217 37.8
HanXRQChr10g0294801 Helianthus annuus HOM05D005305 ORTHO05D006394 7.3e-23 112.8 248 37.1
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 1.2e-22 112.1 222 38.7
PGR042G0513 Punica granatum HOM05D005305 ORTHO05D006394 1.6e-22 111.7 217 38.7
TWI79G0764 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 2.1e-22 111.3 175 40.6
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 3.6e-22 110.5 217 40.6
MBI17_g24510_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 3.6e-22 110.5 240 37.1
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 3.6e-22 110.5 201 39.8
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 6.2e-22 109.8 180 40.0
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 6.2e-22 109.8 220 37.3
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 6.2e-22 109.8 230 36.1
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 1.1e-21 109.0 228 38.6
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 1.8e-21 108.2 222 36.0
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 6.8e-21 106.3 217 39.6
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 6.8e-21 106.3 165 40.0
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 8.9e-21 105.9 179 41.3
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 1.2e-20 105.5 169 42.6
SGA_v2.0_scaffold47G17682 Striga asiatica HOM05D005305 ORTHO05D006394 1.5e-20 105.1 235 36.2
Potri.019G002300 Populus trichocarpa HOM05D005305 ORTHO05D006394 2.6e-20 104.4 190 40.0
Nitab4.5_0002138g0070 Nicotiana tabacum HOM05D005305 ORTHO05D006394 3.4e-20 104.0 148 45.3
Potri.001G306800 Populus trichocarpa HOM05D005305 ORTHO05D006394 4.4e-20 103.6 188 40.4
FAN22G2313 Fragaria x ananassa HOM05D005305 ORTHO05D006394 7.5e-20 102.8 164 40.2
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.3e-19 102.1 215 36.7
PGSC0003DMG400035592 Solanum tuberosum HOM05D005305 ORTHO05D006394 1.3e-19 102.1 157 43.9
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 1.7e-19 101.7 209 38.3
BolC2t10994H Brassica oleracea HOM05D005305 ORTHO05D006394 2.2e-19 101.3 164 39.0
Nitab4.5_0001582g0090 Nicotiana tabacum HOM05D005305 ORTHO05D006394 2.2e-19 101.3 148 43.9
Sabra19G0004600 Salix brachista HOM05D005305 ORTHO05D006394 2.9e-19 100.9 205 37.1
ECA234G0387 Erigeron canadensis HOM05D005305 ORTHO05D006394 4.9e-19 100.1 189 38.6
MBI17_g24663_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 6.4e-19 99.8 241 34.9
Sc04g0009640 Simmondsia chinensis HOM05D005305 ORTHO05D006394 6.4e-19 99.8 258 32.2
CAN.G516.6 Capsicum annuum HOM05D005305 ORTHO05D006394 1.1e-18 99.0 151 45.7
Sopen11g001490 Solanum pennellii HOM05D005305 ORTHO05D006394 1.1e-18 99.0 157 41.4
Solyc11g005490.1 Solanum lycopersicum HOM05D005305 ORTHO05D006394 1.4e-18 98.6 154 41.6
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 2.4e-18 97.8 216 34.7
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 4.1e-18 97.1 161 36.0
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 5.4e-18 96.7 233 34.8
DCAR_001409 Daucus carota HOM05D005305 ORTHO05D006394 9.2e-18 95.9 149 43.0
FvH4_2g02450 Fragaria vesca HOM05D005305 ORTHO05D006394 3.5e-17 94.0 165 35.2
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 6.0e-17 93.2 196 35.2
unitig_32.g10686 Utricularia gibba HOM05D005305 ORTHO05D006394 7.8e-17 92.8 242 33.1
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 1.3e-16 92.0 216 32.9
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 1.7e-16 91.7 178 36.0
FAN15G2678 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.0e-16 90.9 165 36.4
PSO730G0002 Papaver somniferum HOM05D005305 ORTHO05D006394 3.9e-16 90.5 234 31.6
BraA02t08169Z Brassica rapa HOM05D005305 ORTHO05D006394 8.6e-16 89.4 166 36.1
FvH4_2g02380 Fragaria vesca HOM05D005305 ORTHO05D006394 1.5e-15 88.6 165 35.2
FAN12G2268 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.6e-14 84.0 94 46.8
FvH4_4g36540 Fragaria vesca HOM05D005305 ORTHO05D006394 4.7e-14 83.6 94 46.8
FvH4_4g13350 Fragaria vesca HOM05D005305 ORTHO05D006394 1.5e-12 78.6 114 43.9
Dinv02718 Davidia involucrata HOM05D005305 ORTHO05D006394 5.8e-12 76.6 158 36.1
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 2.4e-10 71.2 175 30.3
FAN02G4273 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.4e-10 71.2 107 40.2
FAN05G3957 Fragaria x ananassa HOM05D005305 ORTHO05D006394 7.1e-10 69.7 113 40.7
FAN02G0608 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.5e-09 67.4 106 40.6
FAN22G1821 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.0e-08 65.9 75 48.0
Lalb_Chr17g0338701 Lupinus albus HOM05D002727 ORTHO05D002856 1.0e-08 65.9 132 34.1
FAN20G0407 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.3e-08 64.7 169 32.0
FAN20G1442 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.3e-08 64.7 169 32.0
FAN20G2254 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.3e-08 64.7 169 32.0
FAN20G2361 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.3e-08 64.7 169 32.0
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 2.3e-08 64.7 156 28.2
FAN02G3216 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.9e-08 63.9 163 30.7
EL10Ac6g13873 Beta vulgaris HOM05D005305 ORTHO05D006394 5.1e-08 63.5 113 38.1
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 5.1e-08 63.5 154 37.0
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 6.6e-08 63.2 177 27.1
Sed0024961 Sechium edule HOM05D002727 ORTHO05D002856 8.6e-08 62.8 157 30.6
Rhsim06G0154800 Rhododendron simsii HOM05D007205 ORTHO05D009175 3.3e-07 60.8 138 30.4
C02p49000 Brassica napus HOM05D005305 ORTHO05D006394 4.3e-07 60.5 93 38.7
FvH4_2g04910 Fragaria vesca HOM05D005305 ORTHO05D006394 4.3e-07 60.5 138 34.8
THA.LOC104826759 Tarenaya hassleriana HOM05D007205 ORTHO05D009175 4.3e-07 60.5 127 38.6
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 4.3e-07 60.5 143 29.4
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 5.6e-07 60.1 147 31.3
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 7.3e-07 59.7 121 33.9
Nn1g09223 Nelumbo nucifera HOM05D010623 ORTHO05D012718 7.3e-07 59.7 133 32.3
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 9.6e-07 59.3 140 30.0
Ciclev10017676m.g Citrus clementina HOM05D002727 ORTHO05D002856 9.6e-07 59.3 134 29.9
FAN24G2323 Fragaria x ananassa HOM05D005305 ORTHO05D006394 9.6e-07 59.3 169 32.0
THA.LOC104824571 Tarenaya hassleriana HOM05D002727 ORTHO05D002856 1.2e-06 58.9 162 28.4
Sc12g0002500 Simmondsia chinensis HOM05D007205 ORTHO05D009175 1.6e-06 58.5 130 29.2
THA.LOC104824147 Tarenaya hassleriana HOM05D002727 ORTHO05D002856 1.6e-06 58.5 132 33.3
MELO3C005314.2 Cucumis melo HOM05D002727 ORTHO05D002856 2.1e-06 58.2 175 26.9
AUR62039553 Chenopodium quinoa HOM05D002727 ORTHO05D002856 2.8e-06 57.8 182 29.1
DCAR_025007 Daucus carota HOM05D010623 ORTHO05D012718 2.8e-06 57.8 171 29.2
Manes.17G103100 Manihot esculenta HOM05D002727 ORTHO05D002856 2.8e-06 57.8 180 27.2
Hma1.2p1_0712F.1_g207580 Hydrangea macrophylla HOM05D007205 ORTHO05D009175 3.6e-06 57.4 102 32.4
FAN24G3357 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.2e-06 56.6 176 26.7
AUR62014130 Chenopodium quinoa HOM05D002727 ORTHO05D002856 8.1e-06 56.2 182 28.0
ClCG02G001450 Citrullus lanatus HOM05D007205 ORTHO05D009175 8.1e-06 56.2 104 32.7
Dinv18560 Davidia involucrata HOM05D007205 ORTHO05D009175 8.1e-06 56.2 137 26.3


User provided reference genes

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