Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003544 Sechium edule HOM05D006207 ORTHO05D007868 2.2e-177 625.5 318 100.0
CsaV3_4G026760 Cucumis sativus L. HOM05D006207 ORTHO05D007868 9.5e-149 530.4 324 84.6
ClCG04G006690 Citrullus lanatus HOM05D006207 ORTHO05D007868 2.0e-146 522.7 318 84.6
MELO3C026025.2 Cucumis melo HOM05D006207 ORTHO05D007868 2.0e-146 522.7 322 83.9
Sed0019485 Sechium edule HOM05D006207 ORTHO05D007868 2.5e-141 505.8 324 81.2
CANSAT35G0048 Cannabis sativa HOM05D006207 ORTHO05D007868 1.8e-107 393.3 320 64.1
Manes.09G111300 Manihot esculenta HOM05D006207 ORTHO05D007868 1.1e-101 374.0 314 62.4
Prupe.6G284500 Prunus persica HOM05D006207 ORTHO05D007868 7.6e-98 361.3 322 60.6
GSVIVG01030275001 Vitis vinifera HOM05D006207 ORTHO05D002478 7.1e-96 354.8 313 60.4
Cpa.g.sc5.234 Carica papaya HOM05D006207 ORTHO05D007868 1.3e-92 344.0 319 58.0
TAR623G0507 Trochodendron aralioides HOM05D006207 ORTHO05D007868 8.1e-92 341.3 316 58.5
CiPaw.09G215000 Carya illinoinensis HOM05D006207 ORTHO05D007868 1.2e-90 337.4 323 58.2
Dinv35401 Davidia involucrata HOM05D006207 ORTHO05D007868 2.0e-90 336.7 322 56.8
Thecc.05G007100 Theobroma cacao HOM05D006207 ORTHO05D007868 2.6e-90 336.3 319 58.0
Lj3g0024527 Lotus japonicus HOM05D006207 ORTHO05D007868 5.8e-90 335.1 315 58.4
RcHm_v2.0_Chr3g0461671 Rosa chinensis HOM05D006207 ORTHO05D007868 9.9e-90 334.3 314 57.6
Duzib093G0843 Durio zibethinus HOM05D006207 ORTHO05D007868 1.7e-89 333.6 319 58.9
Actinidia11552 Actinidia chinensis HOM05D006207 ORTHO05D007868 2.9e-89 332.8 319 58.0
Ciclev10012309m.g Citrus clementina HOM05D006207 ORTHO05D007868 2.9e-89 332.8 318 56.6
Actinidia29070 Actinidia chinensis HOM05D006207 ORTHO05D007868 3.8e-89 332.4 320 57.2
TAR633G0541 Trochodendron aralioides HOM05D006207 ORTHO05D007868 3.8e-89 332.4 314 57.0
Gorai.002G266400 Gossypium raimondii HOM05D006207 ORTHO05D007868 1.1e-88 330.9 319 58.3
Gohir.A01G229800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.9e-88 330.1 319 58.0
Gohir.D01G219700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.9e-88 330.1 319 58.0
THA.LOC104823306 Tarenaya hassleriana HOM05D006207 ORTHO05D007868 1.9e-88 330.1 321 56.1
arahy.Tifrunner.gnm1.ann1.S95MPE Arachis hypogaea HOM05D006207 ORTHO05D007868 4.2e-88 328.9 337 53.7
Sp3g07200 Schrenkiella parvula HOM05D006207 ORTHO05D007868 3.5e-87 325.9 321 55.8
CSS0029336 Camellia sinensis var. sinensis HOM05D006207 ORTHO05D007868 4.6e-87 325.5 325 56.6
Dinv12164 Davidia involucrata HOM05D006207 ORTHO05D007868 4.6e-87 325.5 327 55.7
Thhalv10021171m.g Eutrema salsugineum HOM05D006207 ORTHO05D007868 6.7e-86 321.6 320 55.0
AT3G08780 Arabidopsis thaliana HOM05D006207 ORTHO05D007868 8.7e-86 321.2 320 55.0
arahy.Tifrunner.gnm1.ann1.WBCD4G Arachis hypogaea HOM05D006207 ORTHO05D007868 1.1e-85 320.9 338 52.7
Aqoxy1G01290 Aquilegia oxysepala HOM05D006207 ORTHO05D007868 5.6e-85 318.5 338 54.7
Gohir.A09G167800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.3e-84 317.4 319 58.0
Lalb_Chr12g0207271 Lupinus albus HOM05D006207 ORTHO05D007868 1.6e-84 317.0 317 55.5
AL3G19780 Arabidopsis lyrata HOM05D006207 ORTHO05D007868 2.1e-84 316.6 319 54.2
Aa31LG5G18780 Aethionema arabicum HOM05D006207 ORTHO05D007868 3.7e-84 315.8 304 55.9
Gorai.006G185200 Gossypium raimondii HOM05D006207 ORTHO05D007868 3.7e-84 315.8 319 56.7
Psat7g249160 Pisum sativum HOM05D006207 ORTHO05D007868 3.7e-84 315.8 326 53.7
Atru.chr8.2331 Acer truncatum HOM05D006207 ORTHO05D007868 4.8e-84 315.5 331 55.0
FAN05G3975 Fragaria x ananassa HOM05D006207 ORTHO05D007868 6.2e-84 315.1 314 55.7
Nn2g11009 Nelumbo nucifera HOM05D006207 ORTHO05D007868 6.2e-84 315.1 302 55.6
Glyma.01G125600 Glycine max HOM05D006207 ORTHO05D007868 2.4e-83 313.2 317 55.5
FAN05G5543 Fragaria x ananassa HOM05D006207 ORTHO05D007868 4.0e-83 312.4 314 55.4
COL.COLO4_14454 Corchorus olitorius HOM05D006207 ORTHO05D007868 5.3e-83 312.0 321 57.0
C05p59060 Brassica napus HOM05D006207 ORTHO05D007868 6.9e-83 311.6 322 54.3
Phvul.010G064400 Phaseolus vulgaris HOM05D006207 ORTHO05D007868 6.9e-83 311.6 325 53.8
Carub.0003s0791 Capsella rubella HOM05D006207 ORTHO05D007868 9.0e-83 311.2 320 55.3
BolC5t34558H Brassica oleracea HOM05D006207 ORTHO05D007868 1.5e-82 310.5 321 54.8
CARHR083100 Cardamine hirsuta HOM05D006207 ORTHO05D007868 4.5e-82 308.9 317 54.6
Gohir.D09G163700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.3e-81 307.4 319 56.4
PGR031G0899 Punica granatum HOM05D006207 ORTHO05D007868 1.7e-81 307.0 324 52.8
FvH4_6g10650 Fragaria vesca HOM05D006207 ORTHO05D007868 4.9e-81 305.4 314 54.8
FAN14G5611 Fragaria x ananassa HOM05D006207 ORTHO05D007868 4.9e-81 305.4 314 54.8
Duzib106G1231 Durio zibethinus HOM05D006207 ORTHO05D007868 6.5e-81 305.1 301 56.5
Glyma.U032705 Glycine max HOM05D006207 ORTHO05D007868 8.4e-81 304.7 320 53.4
A05p40020 Brassica napus HOM05D006207 ORTHO05D007868 1.1e-80 304.3 321 54.2
vmacro08907 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 1.4e-80 303.9 315 52.4
BraA05t22911Z Brassica rapa HOM05D006207 ORTHO05D007868 4.2e-80 302.4 322 53.7
QL07p033964 Quercus lobata HOM05D006207 ORTHO05D007868 1.2e-79 300.8 313 53.4
TWI53G1221 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 1.6e-79 300.4 314 55.4
FAN09G2678 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.0e-78 297.7 314 54.5
Lsat_1_v5_gn_8_103441 Lactuca sativa HOM05D006207 ORTHO05D007868 5.1e-78 295.4 316 53.2
TWI74G1498 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 1.9e-77 293.5 313 54.6
VMungo0331G1865 Vigna mungo HOM05D006207 ORTHO05D007868 2.8e-76 289.7 312 52.6
Sabra16G0120700 Salix brachista HOM05D006207 ORTHO05D007868 1.4e-75 287.3 318 51.9
Cc06_g00770 Coffea canephora HOM05D006207 ORTHO05D002478 5.3e-75 285.4 314 52.2
PGSC0003DMG400017108 Solanum tuberosum HOM05D006207 ORTHO05D007868 9.0e-75 284.6 312 50.0
Sopen09g008460 Solanum pennellii HOM05D006207 ORTHO05D007868 5.9e-74 282.0 312 50.0
TPR.G5270 Trifolium pratense HOM05D006207 ORTHO05D007868 1.3e-73 280.8 329 48.6
Potri.016G126200 Populus trichocarpa HOM05D006207 ORTHO05D007868 1.7e-73 280.4 318 51.9
CAN.G967.4 Capsicum annuum HOM05D006207 ORTHO05D007868 2.2e-73 280.0 312 50.0
Sc01g0005970 Simmondsia chinensis HOM05D006207 ORTHO05D007868 5.0e-73 278.9 320 51.2
vmacro20324 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 5.5e-72 275.4 306 52.6
EL10Ac5g12487 Beta vulgaris HOM05D006207 ORTHO05D007868 7.2e-72 275.0 317 51.1
Nitab4.5_0000230g0180 Nicotiana tabacum HOM05D006207 ORTHO05D007868 2.8e-68 263.1 301 50.2
Cfa017117 Carpinus fangiana HOM05D006207 ORTHO05D007868 4.8e-68 262.3 303 52.5
SHI12871 Sapria himalayana HOM05D006207 ORTHO05D007868 1.4e-67 260.8 304 51.0
Rhsim04G0125000 Rhododendron simsii HOM05D006207 ORTHO05D007868 1.8e-67 260.4 319 48.6
Medtr4g014250 Medicago truncatula HOM05D006207 ORTHO05D007868 3.1e-67 259.6 310 48.4
Nitab4.5_0015157g0010 Nicotiana tabacum HOM05D006207 ORTHO05D007868 4.5e-66 255.8 302 49.3
PSO765G0078 Papaver somniferum HOM05D006207 ORTHO05D007868 1.3e-65 254.2 320 45.6
HanXRQChr16g0510291 Helianthus annuus HOM05D006207 ORTHO05D007868 2.9e-65 253.1 307 50.5
Oeu038722.1 Olea europaea HOM05D006207 ORTHO05D007868 2.9e-65 253.1 312 46.5
Oeu057638.1 Olea europaea HOM05D006207 ORTHO05D007868 8.5e-65 251.5 314 48.1
BcaC05g29617 Brassica carinata HOM05D006207 ORTHO05D007868 1.9e-64 250.4 278 52.5
CDE07G0940 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 4.2e-64 249.2 312 48.4
Peaxi162Scf00744g00339 Petunia axillaris HOM05D006207 ORTHO05D007868 1.0e-62 244.6 331 45.0
DCAR_023998 Daucus carota HOM05D006207 ORTHO05D007868 1.8e-62 243.8 319 47.6
ECA236G5132 Erigeron canadensis HOM05D006207 ORTHO05D007868 3.9e-62 242.7 318 47.5
Migut.J00099 Erythranthe guttata HOM05D006207 ORTHO05D007868 3.1e-59 233.0 312 46.8
Ah.12g059050 Amaranthus hybridus HOM05D006207 ORTHO05D007868 2.6e-58 229.9 304 47.7
Lj2C67T4 Lonicera japonica HOM05D006207 ORTHO05D007868 2.2e-57 226.9 197 60.9
MBI03_g07303_MAGBIO Magnolia biondii HOM05D006207 ORTHO05D007868 2.2e-57 226.9 307 46.6
MSTRG.5544 Avicennia marina HOM05D006207 ORTHO05D007868 5.0e-57 225.7 314 43.9
HPP92_019707 Vanilla planifolia HOM05D006207 ORTHO05D007868 2.2e-52 210.3 317 42.6
unitig_27.g24873 Utricularia gibba HOM05D006207 ORTHO05D007868 8.2e-52 208.4 311 43.4
CDE06G0694 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 4.5e-50 202.6 314 41.4
Lj3P946T49 Lonicera japonica HOM05D006207 ORTHO05D007868 3.0e-46 189.9 185 52.4
ATR0594G098 Amborella trichopoda HOM05D006207 ORTHO05D007868 5.2e-46 189.1 303 40.3
Solyc09g015180.4 Solanum lycopersicum HOM05D006207 ORTHO05D007868 3.3e-45 186.4 232 45.7
Rhsim05G0225500 Rhododendron simsii HOM05D006207 ORTHO05D007868 1.3e-44 184.5 181 54.7
SEGI_14997 Sequoiadendron giganteum HOM05D006207 ORTHO05D007868 1.5e-40 171.0 388 32.2
Pp3c3_16910 Physcomitrium patens HOM05D006207 ORTHO05D007868 1.2e-39 167.9 343 35.3
Duzib128G0456 Durio zibethinus HOM05D006207 ORTHO05D007868 1.0e-38 164.9 180 51.1
AUR62030762 Chenopodium quinoa HOM05D006207 ORTHO05D007868 4.0e-38 162.9 300 39.7
MD04G1166200 Malus domestica HOM05D006207 ORTHO05D007868 3.4e-37 159.8 168 57.7
Zm00001eb163300 Zea mays HOM05D006207 ORTHO05D007868 9.8e-29 131.7 316 34.5
AUR62030533 Chenopodium quinoa HOM05D006207 ORTHO05D007868 6.3e-28 129.0 131 52.7
AagrBONN_evm.TU.Sc2ySwM_368.1939 Anthoceros agrestis HOM05D006207 ORTHO05D007868 4.5e-26 122.9 389 27.8
Os07g0540200 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 1.3e-25 121.3 307 32.6
CBR_g48858 Chara braunii HOM05D006207 ORTHO05D007868 4.7e-23 112.8 194 40.7
Ca_20352_v3 Cicer arietinum L. HOM05D006207 ORTHO05D007868 2.0e-21 107.5 91 60.4
MD04G1166100 Malus domestica HOM05D006207 ORTHO05D007868 6.4e-20 102.4 72 69.4
Os04g0479300 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 2.0e-18 97.4 309 31.1
Zm00001eb421620 Zea mays HOM05D006207 ORTHO05D007868 2.7e-18 97.1 196 34.2
SalBow6G1507 Salvia bowleyana HOM05D000800 ORTHO05D000658 1.4e-14 84.7 103 44.7
VMungo1215G0839 Vigna mungo HOM05D006207 ORTHO05D007868 5.8e-13 79.3 77 50.6
Mapoly0060s0108 Marchantia polymorpha HOM05D006207 ORTHO05D007868 1.6e-10 71.2 122 39.3
VMungo0647G0753 Vigna mungo HOM05D006207 ORTHO05D007868 6.6e-09 65.9 117 41.0
VMungo1309G1345 Vigna mungo HOM05D006207 ORTHO05D007868 9.5e-08 62.0 69 47.8
Cc08_g04640 Coffea canephora HOM05D006207 ORTHO05D007868 3.6e-07 60.1 82 47.6
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 1.8e-06 57.8 66 47.0
SalBow8G1578 Salvia bowleyana HOM05D006207 ORTHO05D007868 4.0e-06 56.6 59 49.2


User provided reference genes

Program Settings