Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003541 Sechium edule HOM05D005524 ORTHO05D005392 3.0e-22 107.8 64 100.0
Sed0014034 Sechium edule HOM05D005524 ORTHO05D005392 1.8e-19 98.6 64 90.6
Sed0016248 Sechium edule HOM05D005524 ORTHO05D005392 7.0e-19 96.7 64 90.6
ClCG09G004270 Citrullus lanatus HOM05D005524 ORTHO05D005392 9.2e-19 96.3 64 87.5
Sed0007200 Sechium edule HOM05D005524 ORTHO05D005392 1.7e-17 92.0 64 85.9
Sed0021947 Sechium edule HOM05D005524 ORTHO05D005392 4.4e-13 77.4 55 89.1
Sed0003950 Sechium edule HOM05D005524 ORTHO05D005392 2.2e-12 75.1 64 67.2
ClCG10G012450 Citrullus lanatus HOM05D005524 ORTHO05D005392 1.2e-10 69.3 64 65.6
TWI09G0988 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 1.6e-10 68.9 64 68.8
CARHR167870 Cardamine hirsuta HOM05D005524 ORTHO05D005392 2.0e-10 68.6 64 67.2
AT3G57690 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 3.5e-10 67.8 64 67.2
BcaB02g07583 Brassica carinata HOM05D005524 ORTHO05D005392 4.6e-10 67.4 64 65.6
BcaB02g08300 Brassica carinata HOM05D005524 ORTHO05D005392 7.8e-10 66.6 64 64.1
BcaB02g08302 Brassica carinata HOM05D005524 ORTHO05D005392 7.8e-10 66.6 64 64.1
BcaC07g40352 Brassica carinata HOM05D005524 ORTHO05D005392 7.8e-10 66.6 64 64.1
C08p33270 Brassica napus HOM05D005524 ORTHO05D005392 7.8e-10 66.6 64 64.1
BolC8t50929H Brassica oleracea HOM05D005524 ORTHO05D005392 7.8e-10 66.6 64 64.1
BcaC08g44863 Brassica carinata HOM05D005524 ORTHO05D005392 1.0e-09 66.2 64 65.6
A09p50540 Brassica napus HOM05D005524 ORTHO05D005392 1.0e-09 66.2 64 64.1
BolC6t37629H Brassica oleracea HOM05D005524 ORTHO05D005392 1.0e-09 66.2 64 65.6
BraA09t40508Z Brassica rapa HOM05D005524 ORTHO05D005392 1.3e-09 65.9 64 62.5
CsaV3_3G032220 Cucumis sativus L. HOM05D005524 ORTHO05D005392 1.3e-09 65.9 62 66.1
BcaC02g09954 Brassica carinata HOM05D005524 ORTHO05D005392 1.7e-09 65.5 64 64.1
A04p02980 Brassica napus HOM05D005524 ORTHO05D005392 1.7e-09 65.5 64 64.1
C04p34740 Brassica napus HOM05D005524 ORTHO05D005392 1.7e-09 65.5 64 64.1
BolC4t25028H Brassica oleracea HOM05D005524 ORTHO05D005392 1.7e-09 65.5 64 64.1
BraA04t16021Z Brassica rapa HOM05D005524 ORTHO05D005392 1.7e-09 65.5 64 64.1
TWI73G1008 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 1.7e-09 65.5 64 65.6
A07p23640 Brassica napus HOM05D005524 ORTHO05D005392 3.0e-09 64.7 64 64.1
C06p24770 Brassica napus HOM05D005524 ORTHO05D005392 3.0e-09 64.7 64 64.1
BraA07t30018Z Brassica rapa HOM05D005524 ORTHO05D005392 3.0e-09 64.7 64 64.1
BcaC07g40149 Brassica carinata HOM05D005524 ORTHO05D005392 6.6e-09 63.5 64 65.6
Aa31LG10G12450 Aethionema arabicum HOM05D005524 ORTHO05D005392 8.6e-09 63.2 64 67.2
AL5G39310 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 8.6e-09 63.2 65 66.2
Sp5g04940 Schrenkiella parvula HOM05D005524 ORTHO05D005392 1.1e-08 62.8 65 66.2
Thecc.05G164300 Theobroma cacao HOM05D005524 ORTHO05D005392 3.3e-08 61.2 65 63.1
Duzib106G1083 Durio zibethinus HOM05D005524 ORTHO05D005392 4.3e-08 60.8 65 64.6
MELO3C009064.2 Cucumis melo HOM05D019173 ORTHO05D005392 9.5e-08 59.7 65 60.0
AL4G40250 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 2.1e-07 58.5 65 63.1
CARHR137000 Cardamine hirsuta HOM05D005524 ORTHO05D005392 2.1e-07 58.5 65 63.1
Duzib093G2098 Durio zibethinus HOM05D005524 ORTHO05D005392 2.1e-07 58.5 65 61.5
Potri.009G063600 Populus trichocarpa HOM05D005524 ORTHO05D005392 2.1e-07 58.5 64 62.5
AT2G41905 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 4.7e-07 57.4 65 61.5
Haze_03228 Corylus avellana HOM05D000430 ORTHO05D000305 4.7e-07 57.4 67 62.7
Lalb_Chr01g0015271 Lupinus albus HOM05D005524 ORTHO05D005392 4.7e-07 57.4 62 58.1
BcaC01g05321 Brassica carinata HOM05D005524 ORTHO05D005392 6.2e-07 57.0 65 61.5
BcaC02g07275 Brassica carinata HOM05D005524 ORTHO05D005392 6.2e-07 57.0 65 61.5
A03p23470 Brassica napus HOM05D005524 ORTHO05D005392 6.2e-07 57.0 65 60.0
A04p31910 Brassica napus HOM05D005524 ORTHO05D005392 6.2e-07 57.0 65 61.5
C03p27990 Brassica napus HOM05D005524 ORTHO05D005392 6.2e-07 57.0 65 61.5
C04p69380 Brassica napus HOM05D005524 ORTHO05D005392 6.2e-07 57.0 65 61.5
BolC3t15170H Brassica oleracea HOM05D005524 ORTHO05D005392 6.2e-07 57.0 65 61.5
BolC4t28440H Brassica oleracea HOM05D005524 ORTHO05D005392 6.2e-07 57.0 65 61.5
BraA03t11563Z Brassica rapa HOM05D005524 ORTHO05D005392 6.2e-07 57.0 65 60.0
BraA04t18649Z Brassica rapa HOM05D005524 ORTHO05D005392 6.2e-07 57.0 65 61.5
Duzib128G1940 Durio zibethinus HOM05D005524 ORTHO05D005392 6.2e-07 57.0 67 58.2
Sp4g24180 Schrenkiella parvula HOM05D005524 ORTHO05D005392 6.2e-07 57.0 65 61.5
BcaNung07196 Brassica carinata HOM05D005524 ORTHO05D005392 8.1e-07 56.6 65 61.5
BcaB06g29217 Brassica carinata HOM05D005524 ORTHO05D005392 1.1e-06 56.2 65 60.0
Eucgr.A02403 Eucalyptus grandis HOM05D005524 ORTHO05D005392 1.1e-06 56.2 64 60.9
Potri.006G056200 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.1e-06 56.2 64 54.7
SHI24452 Sapria himalayana HOM05D005524 ORTHO05D005392 1.4e-06 55.8 58 62.1
Atru.chr1.974 Acer truncatum HOM05D005524 ORTHO05D005392 1.8e-06 55.5 67 58.2
Eucgr.H02490 Eucalyptus grandis HOM05D005524 ORTHO05D005392 1.8e-06 55.5 64 57.8
BcaB01g03426 Brassica carinata HOM05D005524 ORTHO05D005392 2.3e-06 55.1 65 60.0
Potri.001G268800 Populus trichocarpa HOM05D005524 ORTHO05D005392 2.3e-06 55.1 64 59.4
Sed0023384 Sechium edule HOM05D005524 ORTHO05D005392 2.3e-06 55.1 54 66.7
CsaV3_4G031450 Cucumis sativus L. HOM05D019173 ORTHO05D005392 3.1e-06 54.7 61 60.7
CSS0036301 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 4.0e-06 54.3 64 54.7
Sabra16G0164700 Salix brachista HOM05D005524 ORTHO05D005392 4.0e-06 54.3 64 59.4
Atru.chr1.1006 Acer truncatum HOM05D005524 ORTHO05D005392 5.2e-06 53.9 67 56.7
Carub.0004s2422 Capsella rubella HOM05D005524 ORTHO05D005392 5.2e-06 53.9 65 56.9
Manes.07G004601 Manihot esculenta HOM05D005524 ORTHO05D005392 5.2e-06 53.9 64 53.1
Potri.016G052001 Populus trichocarpa HOM05D005524 ORTHO05D005392 6.8e-06 53.5 60 55.0
Thecc.01G412500 Theobroma cacao HOM05D005524 ORTHO05D005392 6.8e-06 53.5 64 57.8


User provided reference genes

Program Settings