Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003477 Sechium edule HOM05D007590 ORTHO05D007875 2.8e-35 151.8 96 100.0
Sed0026863 Sechium edule HOM05D007590 ORTHO05D007875 1.0e-21 106.7 112 56.2
ClCG07G011620 Citrullus lanatus HOM05D007590 ORTHO05D007875 2.1e-19 99.0 109 70.6
CsaV3_4G006590 Cucumis sativus L. HOM05D007590 ORTHO05D007875 2.0e-17 92.4 108 61.1
MELO3C016294.2 Cucumis melo HOM05D007590 ORTHO05D007875 2.4e-15 85.5 109 63.3
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 5.1e-13 77.8 70 58.6
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 6.6e-13 77.4 70 58.6
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 1.9e-12 75.9 70 58.6
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 1.9e-12 75.9 62 62.9
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 3.3e-12 75.1 97 49.5
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.3e-12 75.1 59 62.7
Glyma.01G225600 Glycine max HOM05D007590 ORTHO05D007875 4.3e-12 74.7 94 41.5
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 4.3e-12 74.7 60 60.0
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 4.3e-12 74.7 62 59.7
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 4.3e-12 74.7 59 62.7
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 5.6e-12 74.3 69 53.6
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 5.6e-12 74.3 70 57.1
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 5.6e-12 74.3 103 45.6
Actinidia22161 Actinidia chinensis HOM05D007590 ORTHO05D007875 7.3e-12 73.9 96 54.2
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 7.3e-12 73.9 104 46.2
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 7.3e-12 73.9 62 56.5
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 7.3e-12 73.9 103 45.6
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 9.6e-12 73.6 62 64.5
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 1.6e-11 72.8 61 60.7
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.6e-11 72.8 101 44.6
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 2.1e-11 72.4 103 44.7
Ca_24513_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 3.6e-11 71.6 99 45.5
Ca_29733_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 3.6e-11 71.6 99 45.5
Sabra03G0101100 Salix brachista HOM05D007590 ORTHO05D007875 3.6e-11 71.6 59 57.6
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.6e-11 71.6 61 57.4
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 4.7e-11 71.2 62 56.5
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 4.7e-11 71.2 62 58.1
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 6.2e-11 70.9 105 39.0
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 8.1e-11 70.5 62 61.3
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 8.1e-11 70.5 97 40.2
SalBow1G4032 Salvia bowleyana HOM05D007590 ORTHO05D007875 1.1e-10 70.1 93 37.6
SalBow1G6340 Salvia bowleyana HOM05D007590 ORTHO05D007875 1.1e-10 70.1 93 37.6
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 1.4e-10 69.7 100 49.0
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 1.4e-10 69.7 63 57.1
Lsat_1_v5_gn_3_10720 Lactuca sativa HOM05D007590 ORTHO05D007875 1.8e-10 69.3 67 50.7
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 1.8e-10 69.3 67 50.7
EL10Ac5g12916 Beta vulgaris HOM05D007590 ORTHO05D007875 2.4e-10 68.9 66 59.1
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 2.4e-10 68.9 66 51.5
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 3.1e-10 68.6 58 58.6
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 3.1e-10 68.6 58 55.2
Sabra01G0067900 Salix brachista HOM05D007590 ORTHO05D007875 3.1e-10 68.6 66 53.0
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 4.0e-10 68.2 67 56.7
Migut.A00642 Erythranthe guttata HOM05D007590 ORTHO05D007875 5.2e-10 67.8 101 49.5
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 8.9e-10 67.0 106 38.7
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 8.9e-10 67.0 63 58.7
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 1.2e-09 66.6 62 53.2
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 1.2e-09 66.6 69 53.6
TPR.G25602 Trifolium pratense HOM05D007590 ORTHO05D007875 1.2e-09 66.6 98 37.8
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 1.5e-09 66.2 70 50.0
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 2.6e-09 65.5 59 59.3
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 3.4e-09 65.1 63 55.6
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 3.4e-09 65.1 62 51.6
Phvul.002G164500 Phaseolus vulgaris HOM05D007590 ORTHO05D007875 3.4e-09 65.1 61 50.8
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 4.4e-09 64.7 66 51.5
DCAR_006487 Daucus carota HOM05D007590 ORTHO05D007875 7.6e-09 63.9 65 52.3
CDE10G0927 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 9.9e-09 63.5 59 54.2
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 1.7e-08 62.8 68 50.0
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 1.7e-08 62.8 70 50.0
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 2.2e-08 62.4 69 52.2
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 2.9e-08 62.0 67 50.7
Gohir.A02G100200 Gossypium hirsutum HOM05D007590 ORTHO05D007875 3.8e-08 61.6 90 52.2
Gorai.003G079000 Gossypium raimondii HOM05D007590 ORTHO05D007875 3.8e-08 61.6 88 44.3
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 4.9e-08 61.2 64 45.3
ATR0602G105 Amborella trichopoda HOM05D007590 ORTHO05D007875 6.4e-08 60.8 67 47.8
CiPaw.12G082700 Carya illinoinensis HOM05D007590 ORTHO05D007875 8.4e-08 60.5 94 40.4
Gohir.D03G083700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 8.4e-08 60.5 88 43.2
CANSAT21G0370 Cannabis sativa HOM05D007590 ORTHO05D007875 1.1e-07 60.1 75 41.3
Gohir.A02G100100 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.1e-07 60.1 88 43.2
Gohir.A12G236500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.4e-07 59.7 67 49.3
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 1.4e-07 59.7 67 49.3
COL.COLO4_10703 Corchorus olitorius HOM05D007590 ORTHO05D007875 1.9e-07 59.3 68 51.5
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.9e-07 59.3 67 47.8
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.9e-07 59.3 67 47.8
Oeu063521.1 Olea europaea HOM05D007590 ORTHO05D007875 2.4e-07 58.9 64 48.4
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 7.1e-07 57.4 63 47.6
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 1.2e-06 56.6 62 45.2
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 1.2e-06 56.6 106 38.7
MBI06_g08455_MAGBIO Magnolia biondii HOM05D007590 ORTHO05D007875 1.2e-06 56.6 59 47.5
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 3.5e-06 55.1 65 52.3
FvH4_5g04610 Fragaria vesca HOM05D007590 ORTHO05D007875 4.6e-06 54.7 51 56.9
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.6e-06 54.7 51 56.9
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.6e-06 54.7 51 56.9
SGA_v2.0_scaffold305G47972 Striga asiatica HOM05D007590 ORTHO05D007875 4.6e-06 54.7 67 43.3
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 6.0e-06 54.3 94 39.4
Eucgr.D01739 Eucalyptus grandis HOM05D007590 ORTHO05D007875 7.8e-06 53.9 73 45.2
Nitab4.5_0002782g0040 Nicotiana tabacum HOM05D007590 ORTHO05D007875 7.8e-06 53.9 68 44.1


User provided reference genes

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