Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 1.0e-158 563.5 316 100.0
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 2.9e-134 482.3 316 83.9
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 1.9e-133 479.6 318 83.0
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 3.1e-128 462.2 338 76.9
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 5.1e-102 375.2 320 64.4
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 7.3e-101 371.3 318 61.3
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 4.0e-99 365.5 319 64.3
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 4.4e-98 362.1 316 66.5
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 5.8e-98 361.7 317 67.2
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 1.3e-97 360.5 318 60.4
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 4.9e-97 358.6 316 59.8
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 8.3e-97 357.8 323 59.4
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 2.4e-96 356.3 318 59.7
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 5.4e-96 355.1 321 60.4
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 5.4e-96 355.1 320 63.1
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 1.2e-95 354.0 325 61.5
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 1.2e-95 354.0 318 61.9
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 1.2e-95 354.0 318 65.4
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 4.6e-95 352.1 320 63.1
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 4.6e-95 352.1 318 64.5
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 6.0e-95 351.7 321 63.2
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 7.8e-95 351.3 314 68.2
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 1.0e-94 350.9 320 64.1
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 3.0e-94 349.4 320 61.2
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 3.0e-94 349.4 316 65.2
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 3.9e-94 349.0 319 59.9
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 6.6e-94 348.2 319 61.4
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 8.6e-94 347.8 308 60.4
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 1.1e-93 347.4 320 60.6
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 1.5e-93 347.1 321 62.0
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 2.5e-93 346.3 218 76.6
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 5.6e-93 345.1 320 59.1
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 7.3e-93 344.7 319 58.9
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 9.6e-93 344.4 314 64.3
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 9.6e-93 344.4 318 60.4
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 9.6e-93 344.4 320 59.1
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 1.6e-92 343.6 318 62.3
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 2.1e-92 343.2 314 63.1
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 4.7e-92 342.0 320 58.8
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 6.2e-92 341.7 318 57.2
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 8.1e-92 341.3 317 58.4
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 1.4e-91 340.5 321 61.7
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 1.4e-91 340.5 316 62.3
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 1.4e-91 340.5 328 57.9
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 4.0e-91 339.0 317 56.8
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 5.2e-91 338.6 217 75.1
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 6.8e-91 338.2 282 62.8
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 1.5e-90 337.0 318 59.1
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 1.5e-90 337.0 315 56.8
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 2.0e-90 336.7 229 71.6
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 2.6e-90 336.3 222 71.2
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 3.4e-90 335.9 315 55.6
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 5.8e-90 335.1 313 56.5
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 7.6e-90 334.7 317 55.5
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 1.3e-89 334.0 317 59.3
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 1.3e-89 334.0 217 72.8
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.3e-89 334.0 314 56.4
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 2.9e-89 332.8 317 55.5
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 1.1e-88 330.9 314 58.0
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 1.1e-88 330.9 311 60.8
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 2.4e-88 329.7 316 58.5
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 3.2e-88 329.3 318 56.3
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 3.2e-88 329.3 314 58.0
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 4.2e-88 328.9 214 73.4
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 1.2e-87 327.4 219 71.7
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 1.6e-87 327.0 314 54.8
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 3.5e-87 325.9 321 55.5
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 4.6e-87 325.5 314 58.9
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.0e-86 324.3 319 57.4
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 2.3e-86 323.2 310 54.5
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 3.0e-86 322.8 318 55.3
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 3.0e-86 322.8 316 54.4
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 3.9e-86 322.4 315 54.9
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 3.9e-86 322.4 315 54.9
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 5.1e-86 322.0 289 58.8
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 8.7e-86 321.2 317 54.6
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 8.7e-86 321.2 314 54.1
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 8.7e-86 321.2 316 54.1
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 1.1e-85 320.9 336 54.8
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 1.5e-85 320.5 317 58.7
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 1.9e-85 320.1 217 69.6
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 3.3e-85 319.3 315 52.7
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 4.3e-85 318.9 201 75.1
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 5.6e-85 318.5 318 53.5
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 9.6e-85 317.8 315 53.7
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 2.8e-84 316.2 219 67.6
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 2.8e-84 316.2 321 53.0
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 1.1e-83 314.3 340 52.6
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 2.4e-83 313.2 215 69.8
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 3.1e-83 312.8 312 58.7
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 5.3e-83 312.0 213 68.1
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 1.5e-82 310.5 329 56.5
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 2.6e-82 309.7 214 67.8
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 2.6e-82 309.7 209 69.4
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 3.4e-82 309.3 214 67.8
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 1.7e-81 307.0 217 70.5
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 4.9e-81 305.4 290 57.2
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 6.4e-81 305.1 215 68.8
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 8.4e-81 304.7 336 50.9
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 1.4e-80 303.9 198 73.2
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 2.4e-80 303.1 308 56.5
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 2.4e-80 303.1 295 63.1
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 4.2e-80 302.4 211 68.2
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 5.4e-80 302.0 321 57.9
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 5.4e-80 302.0 290 60.0
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 4.6e-79 298.9 220 64.5
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 1.0e-78 297.7 217 63.6
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 8.7e-78 294.7 221 67.9
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 2.1e-71 273.5 214 61.2
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 7.9e-71 271.6 316 48.7
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.3e-70 270.8 274 55.1
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 1.8e-67 260.4 212 57.1
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 3.1e-67 259.6 263 57.8
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 2.9e-65 253.1 338 50.6
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 3.2e-64 249.6 219 54.3
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 7.4e-61 238.4 202 58.4
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 4.1e-59 232.6 166 68.1
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 2.6e-58 229.9 228 50.0
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 1.9e-53 213.8 191 59.7
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 2.1e-47 193.7 188 51.1
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 3.8e-41 172.9 109 75.2
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 1.9e-40 170.6 144 59.0
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 2.0e-37 160.6 159 51.6
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 7.0e-35 152.1 269 40.9
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 9.4e-32 141.7 83 74.7
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 1.2e-31 141.4 83 74.7
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 1.5e-29 134.4 125 54.4
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 2.0e-29 134.0 203 36.0
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 2.2e-28 130.6 108 58.3
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 3.5e-26 123.2 68 77.9
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 7.7e-26 122.1 87 64.4
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 1.6e-23 114.4 150 35.3
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 4.8e-20 102.8 199 31.2
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 5.0e-17 92.8 153 41.8
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 1.6e-15 87.8 57 68.4
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 8.8e-14 82.0 66 62.1
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 5.4e-11 72.8 83 47.0
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 4.5e-10 69.7 88 46.6
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.1e-08 65.1 60 53.3
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 5.6e-08 62.8 37 75.7
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 1.2e-07 61.6 35 80.0
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 2.1e-07 60.8 47 63.8
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 8.0e-07 58.9 45 55.6


User provided reference genes

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