Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003364 Sechium edule HOM05D006998 ORTHO05D008733 1.3e-73 279.6 137 100.0
MELO3C014841.2 Cucumis melo HOM05D006998 ORTHO05D008733 4.0e-64 248.1 137 86.9
CiPaw.13G047700 Carya illinoinensis HOM05D006998 ORTHO05D008733 1.8e-59 232.6 137 79.6
QL02p001451 Quercus lobata HOM05D006998 ORTHO05D008733 6.7e-59 230.7 136 79.4
Potri.001G336600 Populus trichocarpa HOM05D006998 ORTHO05D008733 8.7e-59 230.3 137 76.6
Sabra16G0217400 Salix brachista HOM05D006998 ORTHO05D008733 8.7e-59 230.3 137 77.4
Solyc02g093730.4 Solanum lycopersicum HOM05D006998 ORTHO05D008733 1.6e-57 226.1 137 75.2
PGSC0003DMG400012647 Solanum tuberosum HOM05D006998 ORTHO05D008733 2.8e-57 225.3 137 75.2
COL.COLO4_29269 Corchorus olitorius HOM05D006998 ORTHO05D008733 8.2e-57 223.8 137 75.2
GSVIVG01003966001 Vitis vinifera HOM05D006998 ORTHO05D008733 1.8e-56 222.6 137 78.1
Manes.15G155800 Manihot esculenta HOM05D006998 ORTHO05D008733 3.1e-56 221.9 137 74.5
TAR371G1002 Trochodendron aralioides HOM05D006998 ORTHO05D008733 4.0e-56 221.5 137 73.7
MD09G1018100 Malus domestica HOM05D006998 ORTHO05D008733 6.9e-56 220.7 133 76.7
RcHm_v2.0_Chr2g0174071 Rosa chinensis HOM05D006998 ORTHO05D008733 6.9e-56 220.7 137 75.9
Duzib147G0953 Durio zibethinus HOM05D006998 ORTHO05D008733 9.0e-56 220.3 133 75.9
Thecc.04G025300 Theobroma cacao HOM05D006998 ORTHO05D008733 1.2e-55 219.9 133 75.9
Ciclev10017134m.g Citrus clementina HOM05D006998 ORTHO05D008733 1.5e-55 219.5 137 73.0
Atru.chr6.2476 Acer truncatum HOM05D006998 ORTHO05D008733 2.0e-55 219.2 137 74.5
TWI56G1021 Tripterygium wilfordii HOM05D006998 ORTHO05D008733 2.6e-55 218.8 137 73.7
Actinidia18425 Actinidia chinensis HOM05D006998 ORTHO05D008733 4.5e-55 218.0 133 72.9
Gohir.A07G225400 Gossypium hirsutum HOM05D006998 ORTHO05D008733 4.5e-55 218.0 136 73.5
Gohir.D07G232600 Gossypium hirsutum HOM05D006998 ORTHO05D008733 4.5e-55 218.0 136 72.8
Gorai.001G267900 Gossypium raimondii HOM05D006998 ORTHO05D008733 4.5e-55 218.0 136 72.8
FAN14G5586 Fragaria x ananassa HOM05D006998 ORTHO05D008733 1.0e-54 216.9 137 74.5
MSTRG.3117 Avicennia marina HOM05D006998 ORTHO05D008733 2.2e-54 215.7 130 74.6
Ah.13g075640 Amaranthus hybridus HOM05D000240 ORTHO05D001153 3.8e-54 214.9 127 76.4
Eucgr.I01699 Eucalyptus grandis HOM05D006998 ORTHO05D008733 8.4e-54 213.8 137 72.3
AUR62015328 Chenopodium quinoa HOM05D006998 ORTHO05D008733 1.1e-53 213.4 136 72.8
Aqoxy1G01464 Aquilegia oxysepala HOM05D006998 ORTHO05D008733 1.9e-53 212.6 133 70.7
arahy.Tifrunner.gnm1.ann1.W3WD4H Arachis hypogaea HOM05D006998 ORTHO05D008733 1.9e-53 212.6 132 76.5
CANSAT64G0830 Cannabis sativa HOM05D006998 ORTHO05D008733 1.9e-53 212.6 129 76.0
ClCG05G013170 Citrullus lanatus HOM05D006998 ORTHO05D008733 1.9e-53 212.6 107 93.5
Cpa.g.sc130.46 Carica papaya HOM05D006998 ORTHO05D008733 4.2e-53 211.5 137 70.8
CsaV3_3G027380 Cucumis sativus L. HOM05D006998 ORTHO05D008733 4.2e-53 211.5 107 92.5
PSO782G5351 Papaver somniferum HOM05D006998 ORTHO05D008733 4.2e-53 211.5 131 73.3
MBI06_g05240_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 5.5e-53 211.1 140 70.0
EL10Ac3g06878 Beta vulgaris HOM05D006998 ORTHO05D008733 2.1e-52 209.1 130 73.1
Medtr3g052740 Medicago truncatula HOM05D006998 ORTHO05D008733 4.6e-52 208.0 137 74.5
vmacro18311 Vaccinium macrocarpon HOM05D006998 ORTHO05D008733 4.6e-52 208.0 142 68.3
arahy.Tifrunner.gnm1.ann1.24IP75 Arachis hypogaea HOM05D006998 ORTHO05D008733 6.0e-52 207.6 132 75.8
Zm00001eb144320 Zea mays HOM05D006998 ORTHO05D008733 6.0e-52 207.6 131 72.5
Ca_14748_v3 Cicer arietinum L. HOM05D006998 ORTHO05D008733 2.3e-51 205.7 132 75.0
Cc07_g00360 Coffea canephora HOM05D006998 ORTHO05D008733 2.3e-51 205.7 132 69.7
Lalb_Chr20g0116091 Lupinus albus HOM05D006998 ORTHO05D008733 3.0e-51 205.3 131 74.8
Glyma.08G318800 Glycine max HOM05D006998 ORTHO05D008733 3.9e-51 204.9 122 77.9
TPR.G39742 Trifolium pratense HOM05D006998 ORTHO05D008733 3.9e-51 204.9 130 74.6
Phvul.006G045900 Phaseolus vulgaris HOM05D006998 ORTHO05D008733 5.1e-51 204.5 132 74.2
TPR.G33763 Trifolium pratense HOM05D006998 ORTHO05D008733 6.7e-51 204.1 132 74.2
Lj6g0003593 Lotus japonicus HOM05D006998 ORTHO05D008733 8.7e-51 203.8 132 75.8
SGA_v2.0_scaffold135G34933 Striga asiatica HOM05D006998 ORTHO05D008733 1.1e-50 203.4 131 68.7
ECA232G0345 Erigeron canadensis HOM05D006998 ORTHO05D008733 3.3e-50 201.8 133 70.7
SalBow2G2409 Salvia bowleyana HOM05D006998 ORTHO05D008733 4.3e-50 201.4 131 68.7
Sc03g0006900 Simmondsia chinensis HOM05D006998 ORTHO05D008733 7.4e-50 200.7 127 70.1
Migut.H00050 Erythranthe guttata HOM05D006998 ORTHO05D008733 1.6e-49 199.5 107 84.1
HanXRQChr09g0255661 Helianthus annuus HOM05D006998 ORTHO05D008733 3.7e-49 198.4 135 66.7
CDE04G0536 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 8.2e-49 197.2 137 67.2
Os02g0197800 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 8.2e-49 197.2 132 68.9
MBI06_g43854_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 1.1e-48 196.8 107 83.2
Sc03g0007000 Simmondsia chinensis HOM05D006998 ORTHO05D008733 1.1e-48 196.8 127 69.3
THA.LOC104823962 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 1.4e-48 196.4 130 72.3
THA.LOC104823963 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 1.4e-48 196.4 130 72.3
Lsat_1_v5_gn_4_184841 Lactuca sativa HOM05D006998 ORTHO05D008733 2.4e-48 195.7 132 68.9
ATR1089G022 Amborella trichopoda HOM05D006998 ORTHO05D008733 3.1e-48 195.3 126 70.6
Peaxi162Scf00080g01715 Petunia axillaris HOM05D006998 ORTHO05D008733 3.1e-48 195.3 107 80.4
Nitab4.5_0000040g0550 Nicotiana tabacum HOM05D006998 ORTHO05D008733 5.3e-48 194.5 107 81.3
Nitab4.5_0005414g0020 Nicotiana tabacum HOM05D006998 ORTHO05D008733 5.3e-48 194.5 107 81.3
CAN.G473.52 Capsicum annuum HOM05D006998 ORTHO05D008733 1.2e-47 193.4 107 81.3
BcaC06g31012 Brassica carinata HOM05D006998 ORTHO05D008733 1.5e-47 193.0 127 70.1
A06p41260 Brassica napus HOM05D006998 ORTHO05D008733 4.5e-47 191.4 133 69.2
BraA06t27050Z Brassica rapa HOM05D006998 ORTHO05D008733 4.5e-47 191.4 133 69.2
PSO063G6009 Papaver somniferum HOM05D006998 ORTHO05D008733 4.5e-47 191.4 170 57.1
C07p36390 Brassica napus HOM05D006998 ORTHO05D008733 2.9e-46 188.7 130 68.5
FAN05G2331 Fragaria x ananassa HOM05D006998 ORTHO05D008733 2.9e-46 188.7 107 82.2
BolC7t44158H Brassica oleracea HOM05D006998 ORTHO05D008733 5.0e-46 188.0 130 68.5
Sp2g16530 Schrenkiella parvula HOM05D006998 ORTHO05D008733 5.0e-46 188.0 126 69.8
HPP92_007225 Vanilla planifolia HOM05D006998 ORTHO05D008733 5.0e-46 188.0 123 71.5
A02p35400 Brassica napus HOM05D006998 ORTHO05D008733 6.5e-46 187.6 130 68.5
BraA02t08541Z Brassica rapa HOM05D006998 ORTHO05D008733 8.5e-46 187.2 130 68.5
Carub.0005s0564 Capsella rubella HOM05D006998 ORTHO05D008733 8.5e-46 187.2 128 68.0
arahy.Tifrunner.gnm1.ann1.5E1CRJ Arachis hypogaea HOM05D006998 ORTHO05D008733 1.1e-45 186.8 130 70.0
Aa31LG2G5380 Aethionema arabicum HOM05D006998 ORTHO05D008733 1.9e-45 186.0 133 67.7
AL5G16660 Arabidopsis lyrata HOM05D006998 ORTHO05D008733 1.9e-45 186.0 127 67.7
C02p54110 Brassica napus HOM05D006998 ORTHO05D008733 3.2e-45 185.3 130 66.9
BolC2t11473H Brassica oleracea HOM05D006998 ORTHO05D008733 3.2e-45 185.3 130 66.9
CDE07G0016 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 5.5e-45 184.5 111 74.8
SalBow2G0885 Salvia bowleyana HOM05D006998 ORTHO05D008733 6.1e-44 181.0 107 76.6
Hund25052 Selenicereus undatus HOM05D006998 ORTHO05D008733 5.1e-43 177.9 131 63.4
Os01g0904300 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 2.2e-41 172.6 107 72.9
Dinv25701 Davidia involucrata HOM05D006998 ORTHO05D008733 8.2e-33 144.1 72 90.3
Haze_03392 Corylus avellana HOM05D006998 ORTHO05D008733 1.1e-32 143.7 87 79.3
Haze_03396 Corylus avellana HOM05D006998 ORTHO05D008733 1.1e-32 143.7 87 79.3
AagrBONN_evm.TU.Sc2ySwM_362.2114 Anthoceros agrestis HOM05D006998 ORTHO05D008733 4.1e-32 141.7 107 58.9
Cfa010438 Carpinus fangiana HOM05D006998 ORTHO05D008733 5.3e-32 141.4 87 78.2
SHI03852 Sapria himalayana HOM05D006998 ORTHO05D008733 2.6e-31 139.0 102 65.7
DCAR_011285 Daucus carota HOM05D006998 ORTHO05D008733 3.5e-31 138.7 138 52.2
SMO364G0335 Selaginella moellendorffii HOM05D006998 ORTHO05D008733 5.9e-31 137.9 101 61.4
VMungo0540G0081 Vigna mungo HOM05D006998 ORTHO05D008733 3.8e-30 135.2 93 71.0
COL.COLO4_29265 Corchorus olitorius HOM05D006998 ORTHO05D008733 6.1e-28 127.9 90 66.7
FAN02G1980 Fragaria x ananassa HOM05D006998 ORTHO05D008733 1.4e-27 126.7 88 69.3
unitig_744.g24361 Utricularia gibba HOM05D002252 ORTHO05D002451 1.8e-27 126.3 93 61.3
Pp3c11_10230 Physcomitrium patens HOM05D006998 ORTHO05D008733 6.7e-27 124.4 104 55.8
PGR142G0400 Punica granatum HOM05D006998 ORTHO05D008733 2.6e-26 122.5 89 62.9
Psat5g174840 Pisum sativum HOM05D006998 ORTHO05D008733 1.1e-24 117.1 82 69.5
AT3G27340 Arabidopsis thaliana HOM05D006998 ORTHO05D008733 2.4e-24 115.9 84 67.9
Nn5g27086 Nelumbo nucifera HOM05D006998 ORTHO05D008733 2.4e-24 115.9 78 67.9
Sed0018714 Sechium edule HOM05D006998 ORTHO05D008733 5.3e-24 114.8 66 84.8
Thhalv10005152m.g Eutrema salsugineum HOM05D006998 ORTHO05D008733 7.0e-24 114.4 83 67.5
CARHR148660 Cardamine hirsuta HOM05D006998 ORTHO05D008733 2.9e-22 109.0 81 66.7
CBR_g38954 Chara braunii HOM05D006723 ORTHO05D008194 1.5e-21 106.7 99 48.5
Sed0022519 Sechium edule HOM05D006998 ORTHO05D008733 1.6e-20 103.2 49 95.9
Prupe.3G299000 Prunus persica HOM05D000008 ORTHO05D000005 1.2e-15 87.0 62 64.5
FvH4_6g52430 Fragaria vesca HOM05D006998 ORTHO05D008733 1.6e-15 86.7 66 60.6
Dinv33390 Davidia involucrata HOM05D006998 ORTHO05D008733 2.0e-15 86.3 67 56.7
BcaB01g01217 Brassica carinata HOM05D006998 ORTHO05D008733 7.7e-15 84.3 72 58.3
Medtr1252s0010 Medicago truncatula HOM05D006998 ORTHO05D008733 4.2e-13 78.6 81 46.9
THA.LOC104801054 Tarenaya hassleriana HOM05D002401 ORTHO05D007109 7.2e-13 77.8 65 64.6
Cre09.g413300 Chlamydomonas reinhardtii HOM05D006998 ORTHO05D008733 3.0e-11 72.4 60 51.7
Mapoly0001s0548 Marchantia polymorpha HOM05D006998 ORTHO05D008733 1.2e-10 70.5 91 42.9


User provided reference genes

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