Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 1.0e-39 166.4 91 100.0
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 1.2e-24 116.3 84 72.6
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 3.5e-24 114.8 84 73.8
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 1.0e-23 113.2 84 71.4
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 4.3e-22 107.8 92 67.4
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 1.3e-21 106.3 91 64.8
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 1.6e-21 105.9 92 64.1
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 2.2e-21 105.5 92 64.1
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 2.8e-21 105.1 92 63.0
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 4.8e-21 104.4 92 64.1
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 1.1e-20 103.2 92 65.2
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 1.8e-20 102.4 92 66.3
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 4.1e-20 101.3 92 64.1
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 5.3e-20 100.9 92 60.9
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 1.2e-19 99.8 92 59.8
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 2.0e-19 99.0 91 61.5
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 5.9e-19 97.4 94 58.5
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 1.0e-18 96.7 85 62.4
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 1.0e-18 96.7 85 62.4
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 1.0e-18 96.7 85 65.9
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 1.3e-18 96.3 85 62.4
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 1.7e-18 95.9 91 60.4
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 2.2e-18 95.5 92 64.1
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 2.9e-18 95.1 85 62.4
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 2.9e-18 95.1 85 62.4
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 2.9e-18 95.1 85 62.4
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 2.9e-18 95.1 85 62.4
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 2.9e-18 95.1 85 62.4
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 3.8e-18 94.7 85 62.4
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 3.8e-18 94.7 85 62.4
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 3.8e-18 94.7 85 62.4
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 3.8e-18 94.7 85 62.4
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 5.0e-18 94.4 91 58.2
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 5.0e-18 94.4 82 63.4
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 5.0e-18 94.4 85 67.1
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 6.5e-18 94.0 85 62.4
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 8.5e-18 93.6 85 64.7
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 1.1e-17 93.2 85 61.2
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 1.4e-17 92.8 85 63.5
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 1.9e-17 92.4 85 62.4
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 7.2e-17 90.5 83 61.4
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 7.2e-17 90.5 85 61.2
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 9.3e-17 90.1 87 55.2
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 9.3e-17 90.1 83 63.9
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 9.3e-17 90.1 83 60.2
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.2e-16 89.7 85 61.2
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.2e-16 89.7 90 58.9
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 1.2e-16 89.7 85 60.0
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 2.7e-16 88.6 84 60.7
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 3.6e-16 88.2 86 60.5
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 3.6e-16 88.2 87 63.2
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 7.9e-16 87.0 84 59.5
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 1.0e-15 86.7 85 60.0
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 1.0e-15 86.7 85 58.8
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.4e-15 86.3 87 57.5
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 1.4e-15 86.3 87 56.3
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 2.3e-15 85.5 93 52.7
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 2.3e-15 85.5 85 57.6
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 3.9e-15 84.7 85 57.6
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 5.1e-15 84.3 85 58.8
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 6.7e-15 84.0 87 58.6
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 8.8e-15 83.6 86 58.1
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 8.8e-15 83.6 85 57.6
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.5e-14 82.8 90 56.7
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 1.5e-14 82.8 85 58.8
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.9e-14 82.4 85 56.5
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.9e-14 82.4 85 56.5
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 1.9e-14 82.4 85 58.8
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 2.5e-14 82.0 80 60.0
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 2.5e-14 82.0 85 58.8
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 4.3e-14 81.3 85 57.6
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 7.4e-14 80.5 85 55.3
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 9.7e-14 80.1 89 55.1
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 9.7e-14 80.1 85 57.6
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 1.3e-13 79.7 85 55.3
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 1.3e-13 79.7 85 55.3
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 1.3e-13 79.7 84 56.0
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 2.8e-13 78.6 85 55.3
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 2.8e-13 78.6 84 58.3
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 3.7e-13 78.2 86 57.0
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 4.8e-13 77.8 85 57.6
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 8.2e-13 77.0 86 55.8
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 8.2e-13 77.0 78 57.7
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 1.8e-12 75.9 96 51.0
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 4.1e-12 74.7 99 52.5
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 4.1e-12 74.7 77 55.8
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 5.3e-12 74.3 90 57.8
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 5.3e-12 74.3 85 56.5
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 5.3e-12 74.3 84 52.4
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 6.9e-12 73.9 87 54.0
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 1.5e-11 72.8 111 45.9
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 4.5e-11 71.2 84 53.6
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 4.5e-11 71.2 110 49.1
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 1.0e-10 70.1 103 43.7
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 1.3e-10 69.7 111 44.1
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 2.2e-10 68.9 104 49.0
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 2.9e-10 68.6 98 51.0
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 2.9e-10 68.6 122 43.4
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 6.5e-10 67.4 101 48.5
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 8.5e-10 67.0 108 43.5
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 8.5e-10 67.0 98 48.0
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 2.5e-09 65.5 97 46.4
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 4.2e-09 64.7 98 48.0
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 7.2e-09 63.9 99 46.5
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 9.4e-09 63.5 100 47.0
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.6e-08 62.8 97 47.4
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 2.1e-08 62.4 106 43.4
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 2.7e-08 62.0 88 46.6
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 2.7e-08 62.0 87 48.3
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 4.7e-08 61.2 92 51.1
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 4.7e-08 61.2 42 71.4
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 7.9e-08 60.5 44 70.5
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 7.9e-08 60.5 87 49.4
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 7.9e-08 60.5 85 43.5
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 1.0e-07 60.1 74 52.7
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 1.4e-07 59.7 100 45.0
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.8e-07 59.3 90 48.9
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 1.8e-07 59.3 42 73.8
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 2.3e-07 58.9 96 44.8
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 2.3e-07 58.9 98 45.9
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 3.0e-07 58.5 99 43.4
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 3.0e-07 58.5 84 46.4
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 3.9e-07 58.2 76 50.0
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 6.7e-07 57.4 42 66.7
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 6.7e-07 57.4 89 49.4
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 6.7e-07 57.4 82 47.6
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 8.8e-07 57.0 88 48.9
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.1e-06 56.6 82 47.6
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 1.1e-06 56.6 91 42.9
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 1.1e-06 56.6 99 44.4
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.5e-06 56.2 95 44.2
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 1.5e-06 56.2 94 40.4
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 1.5e-06 56.2 91 50.5
Zm00001eb204980 Zea mays HOM05D007429 ORTHO05D003505 1.5e-06 56.2 92 46.7
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 2.0e-06 55.8 91 46.2
ATR0705G084 Amborella trichopoda HOM05D007429 ORTHO05D003505 2.6e-06 55.5 86 48.8
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 2.6e-06 55.5 86 43.0
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 2.6e-06 55.5 86 46.5
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 2.6e-06 55.5 86 46.5
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 3.3e-06 55.1 104 44.2
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 3.3e-06 55.1 103 43.7
CDE04G0461 Ceratophyllum demersum HOM05D005822 ORTHO05D007267 3.3e-06 55.1 64 51.6
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 3.3e-06 55.1 87 46.0
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 4.4e-06 54.7 94 41.5
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 4.4e-06 54.7 98 45.9
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 4.4e-06 54.7 73 50.7
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 5.7e-06 54.3 98 43.9
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 5.7e-06 54.3 97 46.4
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 5.7e-06 54.3 98 43.9
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 7.4e-06 53.9 103 44.7
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 7.4e-06 53.9 102 44.1
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 7.4e-06 53.9 103 44.7
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 7.4e-06 53.9 98 45.9
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 7.4e-06 53.9 96 45.8
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 9.7e-06 53.5 100 46.0
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 9.7e-06 53.5 97 41.2
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 9.7e-06 53.5 94 44.7
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 9.7e-06 53.5 94 44.7
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 9.7e-06 53.5 89 44.9
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 9.7e-06 53.5 98 43.9
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 9.7e-06 53.5 98 43.9


User provided reference genes

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