Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 8.5e-217 756.9 435 100.0
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 1.5e-141 506.9 463 68.5
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 1.1e-123 447.6 464 60.6
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.9e-123 446.8 464 60.1
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 1.9e-123 446.8 467 59.5
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 3.2e-123 446.0 448 62.9
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 4.6e-122 442.2 460 59.8
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 7.9e-122 441.4 465 61.7
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.6e-119 433.7 446 60.3
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 2.8e-119 433.0 466 60.7
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 3.7e-119 432.6 439 62.0
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.1e-118 429.5 464 58.8
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 1.5e-117 427.2 457 59.1
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 2.6e-117 426.4 472 58.5
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 4.5e-117 425.6 445 59.6
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 5.9e-117 425.2 446 59.6
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 7.7e-117 424.9 461 60.1
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 1.0e-116 424.5 445 59.3
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 2.9e-116 422.9 457 58.6
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 7.9e-114 414.8 444 58.3
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.0e-113 414.5 445 58.0
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 1.8e-113 413.7 463 59.4
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 6.7e-113 411.8 477 56.8
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 8.8e-113 411.4 332 71.7
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 8.8e-113 411.4 438 59.6
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.1e-112 411.0 461 57.5
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 2.0e-112 410.2 439 60.1
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 7.4e-112 408.3 441 59.4
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 2.8e-111 406.4 425 59.8
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 1.1e-110 404.4 464 58.2
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 3.1e-110 402.9 441 59.4
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 1.5e-109 400.6 444 59.5
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 1.3e-108 397.5 443 58.0
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.7e-108 397.1 431 58.5
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 2.2e-108 396.7 448 57.4
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 1.4e-107 394.0 446 58.7
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 1.9e-107 393.7 434 57.4
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 1.9e-107 393.7 290 76.2
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 3.2e-107 392.9 440 58.6
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 3.2e-107 392.9 436 57.6
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 9.4e-107 391.3 434 57.6
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 1.6e-106 390.6 437 56.8
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 4.7e-106 389.0 288 75.0
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 1.4e-105 387.5 438 57.3
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 1.4e-105 387.5 438 57.5
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 1.8e-105 387.1 462 56.1
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 1.8e-105 387.1 448 61.2
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.5e-104 384.0 460 55.2
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 2.0e-104 383.6 440 58.2
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 2.0e-104 383.6 435 57.0
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 2.0e-104 383.6 435 57.0
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 1.3e-103 380.9 289 74.0
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 2.2e-103 380.2 433 56.1
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 8.2e-103 378.3 459 54.7
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.1e-102 375.9 444 54.7
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 4.1e-102 375.9 296 72.6
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 1.2e-101 374.4 458 53.9
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 2.6e-101 373.2 451 56.5
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 1.3e-100 370.9 441 54.9
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 3.8e-100 369.4 423 55.6
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 3.8e-100 369.4 423 55.6
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 6.5e-100 368.6 406 57.6
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 1.1e-99 367.9 424 54.7
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 4.2e-99 365.9 427 54.6
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 5.5e-99 365.5 423 55.1
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.2e-98 364.4 463 53.3
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 1.0e-97 361.3 278 74.1
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 1.5e-96 357.5 422 56.4
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 1.5e-96 357.5 449 53.2
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 2.0e-96 357.1 437 53.5
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 3.3e-96 356.3 473 54.5
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 4.8e-95 352.4 503 48.3
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 1.6e-93 347.4 557 46.0
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 2.0e-93 347.1 284 67.3
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 5.9e-93 345.5 440 52.7
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 2.2e-92 343.6 419 54.2
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 2.2e-92 343.6 428 53.5
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 1.9e-91 340.5 285 68.1
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 2.5e-91 340.1 428 53.0
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 4.0e-89 332.8 456 51.1
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 1.2e-88 331.3 369 57.2
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 1.3e-87 327.8 470 50.2
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 2.4e-86 323.6 301 68.1
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 3.1e-86 323.2 452 49.6
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 3.1e-86 323.2 433 50.6
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 4.5e-85 319.3 433 50.3
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 2.2e-84 317.0 451 47.0
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 3.7e-79 299.7 282 63.5
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 8.3e-79 298.5 392 51.3
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 1.4e-78 297.7 284 60.2
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 1.0e-76 291.6 463 47.1
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 2.3e-76 290.4 422 48.8
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 1.2e-74 284.6 471 45.9
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.2e-72 278.1 468 45.5
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 3.4e-72 276.6 454 47.1
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 9.8e-72 275.0 253 68.0
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 4.1e-70 269.6 474 44.3
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 1.5e-67 261.2 287 54.4
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 3.1e-65 253.4 465 44.7
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 1.5e-64 251.1 458 42.6
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 2.0e-64 250.8 227 66.1
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 2.6e-64 250.4 441 44.9
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 7.0e-62 242.3 342 48.5
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 9.2e-62 241.9 248 56.0
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 2.3e-60 237.3 447 42.7
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 1.1e-54 218.4 448 41.1
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 6.0e-53 212.6 289 50.9
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 3.9e-52 209.9 280 47.9
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 9.9e-48 195.3 386 39.6
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 1.5e-40 171.4 406 37.2
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 1.1e-38 165.2 265 42.3
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 1.5e-32 144.8 404 35.1
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.9e-30 137.9 178 52.2
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 8.7e-28 129.0 88 84.1
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 3.1e-25 120.6 246 38.6
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 5.5e-22 109.8 92 66.3
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 5.5e-22 109.8 92 66.3
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 1.0e-20 105.5 235 38.3
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 1.0e-20 105.5 166 47.0
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 1.3e-20 105.1 235 38.3
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 1.8e-17 94.7 274 33.6
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 1.1e-14 85.5 245 31.8
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 1.4e-14 85.1 86 59.3
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 4.2e-14 83.6 163 41.7
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.7e-13 80.9 158 42.4
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 2.5e-11 74.3 352 27.8
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 1.6e-10 71.6 61 63.9
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 1.0e-07 62.4 119 45.4


User provided reference genes

Program Settings