Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1864.0 1021 100.0
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1569.3 994 86.2
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 0.0e+00 1494.9 1006 82.5
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 0.0e+00 1491.5 1006 83.3
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 0.0e+00 1416.4 1006 79.4
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1183.7 1066 66.0
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1179.9 1037 65.3
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1175.2 1055 65.1
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1168.7 1021 65.9
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 0.0e+00 1168.7 1061 65.2
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1167.5 1018 65.9
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1158.3 1057 63.7
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 0.0e+00 1158.3 1026 66.9
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1138.6 1015 65.3
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 0.0e+00 1134.8 1030 64.6
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 0.0e+00 1132.9 1031 63.9
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1128.6 1032 63.0
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 0.0e+00 1127.1 1059 63.6
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1122.8 1051 61.8
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 0.0e+00 1112.4 1040 62.6
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 0.0e+00 1110.9 1043 63.1
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 0.0e+00 1108.2 1010 64.2
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 0.0e+00 1107.0 1026 64.3
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 0.0e+00 1104.7 1046 62.7
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 0.0e+00 1104.7 1091 59.9
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 0.0e+00 1103.2 1040 64.0
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 0.0e+00 1103.2 1027 62.6
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 0.0e+00 1101.7 1023 64.0
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1091.6 1031 62.4
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 0.0e+00 1090.5 978 64.8
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1089.7 1025 61.7
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1087.0 1033 62.1
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 0.0e+00 1080.9 1007 61.5
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1077.8 1033 62.1
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 0.0e+00 1077.4 1029 60.7
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 7.0e-312 1074.3 1030 61.9
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 1.4e-311 1072.8 1062 59.2
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 4.9e-311 1071.2 1061 59.3
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 1.5e-309 1066.2 1031 60.5
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 1.3e-308 1063.1 1019 63.4
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 2.2e-308 1062.4 1008 61.7
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 1.1e-307 1060.1 1000 62.5
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 1.1e-307 1060.1 1195 56.5
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 1.4e-307 1059.7 1048 61.4
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 1.9e-307 1059.3 1064 60.0
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 5.5e-307 1057.7 1015 62.1
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 2.3e-305 1052.4 1003 61.2
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 3.9e-305 1051.6 1020 62.1
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 1.5e-304 1049.7 1067 60.0
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 1.5e-304 1049.7 1061 60.3
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.5e-304 1048.9 1058 58.9
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 7.4e-304 1047.3 1012 62.1
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 2.4e-302 1042.3 1057 61.0
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 2.4e-302 1042.3 1010 61.2
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 3.4e-301 1038.5 1022 60.5
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 5.9e-301 1037.7 1009 59.9
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 3.8e-300 1035.0 923 64.2
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 1.9e-299 1032.7 991 60.5
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 2.5e-299 1032.3 1010 59.7
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 7.2e-299 1030.8 1091 55.2
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.6e-298 1029.6 1040 60.4
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.0e-297 1026.9 1039 58.7
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 8.7e-297 1023.8 1026 60.4
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 4.8e-295 1018.1 1040 58.5
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 1.2e-293 1013.4 999 59.7
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 2.0e-293 1012.7 1020 59.3
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 1.3e-292 1010.0 1063 58.6
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 1.3e-292 1010.0 1066 58.2
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 1.7e-292 1009.6 1014 58.7
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 2.2e-292 1009.2 912 63.3
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 2.9e-292 1008.8 1029 59.6
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.0e-289 1000.3 866 64.3
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 2.4e-286 989.2 1010 60.1
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 4.1e-286 988.4 1032 56.3
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 5.3e-286 988.0 1019 59.7
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 8.5e-284 980.7 916 62.1
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 2.5e-283 979.2 859 63.6
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 5.5e-283 978.0 1021 56.5
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 9.4e-283 977.2 1037 54.2
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 9.4e-283 977.2 1013 57.9
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 1.2e-282 976.9 1007 59.7
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.4e-281 973.4 1020 57.8
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 4.4e-280 968.4 1026 58.4
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 2.4e-278 962.6 1005 59.1
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 4.2e-275 951.8 1017 55.9
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 3.3e-272 942.2 1017 56.8
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 1.8e-270 936.4 990 59.0
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 1.3e-268 930.2 1004 58.0
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 3.8e-268 928.7 1019 54.1
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 7.5e-264 914.4 881 60.5
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 7.5e-264 914.4 1067 52.7
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 4.0e-257 892.1 853 61.0
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 2.0e-256 889.8 889 58.6
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 7.5e-256 887.9 1045 55.0
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 2.4e-254 882.9 1018 52.6
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 1.1e-251 874.0 1011 55.3
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 2.1e-242 843.2 1016 51.1
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 2.3e-241 839.7 1050 51.4
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 6.4e-239 831.6 810 61.2
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.5e-219 766.5 710 64.5
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 7.6e-216 755.0 582 70.3
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.2e-214 749.6 612 67.3
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.6e-208 729.9 615 66.3
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 6.9e-201 705.3 1025 46.4
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 4.5e-192 676.0 917 44.8
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 1.0e-191 674.9 985 44.0
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 1.4e-190 671.0 1004 45.3
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 1.3e-183 647.9 1023 43.5
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 2.9e-175 620.2 546 64.3
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 2.8e-170 603.6 499 68.3
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 3.2e-166 590.1 882 44.1
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 8.0e-165 585.5 727 51.9
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 8.0e-157 558.9 939 39.4
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 1.1e-153 548.5 573 59.0
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.1e-150 538.5 623 52.2
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 6.8e-140 502.7 901 38.7
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 1.7e-127 461.5 360 70.3
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.9e-102 378.3 353 60.1
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 4.7e-101 373.6 1080 32.8
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 6.0e-88 330.1 382 50.8
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 7.4e-86 323.2 628 40.1
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 1.5e-78 298.9 850 32.5
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 5.1e-71 273.9 576 38.5
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 2.0e-62 245.4 943 27.9
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 1.7e-61 242.3 201 67.2
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.9e-55 221.1 230 58.3
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 4.1e-52 211.1 253 55.7
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 4.2e-49 201.1 256 50.8
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.1e-48 198.7 179 61.5
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 3.2e-33 148.3 173 53.2
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 2.1e-32 145.6 155 56.1
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 7.0e-28 130.6 132 57.6
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 5.9e-27 127.5 123 61.8
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 1.7e-26 125.9 224 45.5
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.1e-25 123.2 195 51.8
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 3.2e-20 105.1 213 39.9
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 4.1e-20 104.8 96 55.2
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 7.0e-20 104.0 58 82.8
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 1.2e-19 103.2 51 96.1
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.1e-17 96.7 91 57.1
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 1.6e-08 66.2 45 66.7
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 1.6e-08 66.2 45 66.7
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 6.2e-08 64.3 45 64.4
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 6.2e-08 64.3 45 64.4
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 1.4e-07 63.2 45 62.2
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.4e-07 63.2 37 81.1


User provided reference genes

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