Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003270 Sechium edule HOM05D003497 ORTHO05D003964 3.6e-253 877.9 465 100.0
Sed0016990 Sechium edule HOM05D003497 ORTHO05D003964 5.7e-134 481.9 431 62.2
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 9.3e-76 288.5 518 41.1
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 1.3e-74 284.6 511 41.3
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 8.2e-72 275.4 431 42.0
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 2.4e-71 273.9 514 39.9
Sed0000294 Sechium edule HOM05D003497 ORTHO05D003964 1.6e-67 261.2 357 46.2
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.4e-47 194.1 440 35.2
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 4.1e-47 193.4 458 35.6
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 1.3e-45 188.3 480 32.3
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 7.2e-44 182.6 434 34.1
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 3.6e-43 180.3 480 31.9
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 5.2e-42 176.4 415 33.5
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 1.1e-41 175.3 414 33.1
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 9.7e-41 172.2 390 34.1
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 6.3e-40 169.5 393 31.8
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 1.1e-39 168.7 390 33.6
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 1.8e-39 167.9 412 31.8
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 3.1e-39 167.2 460 31.1
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 5.3e-39 166.4 393 31.6
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 7.0e-39 166.0 418 31.8
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 1.2e-38 165.2 418 31.3
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 3.5e-38 163.7 397 31.5
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 3.5e-38 163.7 430 33.3
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 7.7e-38 162.5 447 32.9
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.3e-37 161.8 455 31.4
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.3e-37 161.8 455 31.4
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 1.3e-37 161.8 427 32.1
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 2.2e-37 161.0 421 32.3
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 3.8e-37 160.2 415 31.6
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 5.0e-37 159.8 435 31.7
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 8.5e-37 159.1 383 33.9
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.5e-36 158.3 425 33.4
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.9e-36 157.9 493 30.4
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 2.5e-36 157.5 452 32.5
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 2.5e-36 157.5 394 32.7
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 3.2e-36 157.1 364 34.6
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 4.2e-36 156.8 508 30.5
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 4.2e-36 156.8 456 31.6
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 5.5e-36 156.4 424 32.1
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 1.2e-35 155.2 452 31.6
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 1.2e-35 155.2 416 33.4
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 1.2e-35 155.2 496 29.0
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 1.6e-35 154.8 447 32.9
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 1.6e-35 154.8 461 30.4
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 4.7e-35 153.3 470 28.7
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 6.1e-35 152.9 548 29.6
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 8.0e-35 152.5 447 31.1
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 1.8e-34 151.4 396 33.1
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 2.3e-34 151.0 443 30.5
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 5.2e-34 149.8 384 31.5
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 5.2e-34 149.8 391 32.2
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 6.7e-34 149.4 458 30.6
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 1.5e-33 148.3 429 31.5
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 2.6e-33 147.5 441 30.2
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 5.7e-33 146.4 504 28.8
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 1.7e-32 144.8 439 30.3
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 2.2e-32 144.4 464 28.9
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 2.2e-32 144.4 384 32.0
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 2.8e-32 144.1 492 28.0
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 3.7e-32 143.7 449 30.7
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 4.8e-32 143.3 443 31.2
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 4.8e-32 143.3 457 28.7
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 6.3e-32 142.9 397 29.7
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.4e-31 141.7 503 28.6
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 1.4e-31 141.7 445 30.3
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 5.3e-31 139.8 395 29.9
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 5.3e-31 139.8 253 36.8
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 5.3e-31 139.8 416 30.5
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 9.1e-31 139.0 378 31.5
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 9.1e-31 139.0 374 30.7
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 1.2e-30 138.7 479 28.0
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 1.6e-30 138.3 423 31.2
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 2.0e-30 137.9 395 29.6
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 2.0e-30 137.9 395 29.6
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 3.5e-30 137.1 421 30.9
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 3.5e-30 137.1 366 34.7
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 4.5e-30 136.7 434 28.8
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 5.9e-30 136.3 436 28.7
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 7.7e-30 136.0 455 27.9
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 7.7e-30 136.0 449 28.7
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 1.0e-29 135.6 496 27.4
Sed0009840 Sechium edule HOM05D003497 ORTHO05D003964 1.0e-29 135.6 212 40.6
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 1.7e-29 134.8 399 29.1
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 1.7e-29 134.8 434 29.0
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 5.0e-29 133.3 418 28.0
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 6.5e-29 132.9 463 29.6
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 8.5e-29 132.5 409 29.3
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.1e-28 132.1 253 35.6
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 4.2e-28 130.2 418 29.2
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 5.5e-28 129.8 518 27.0
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 9.4e-28 129.0 452 30.5
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 9.4e-28 129.0 498 27.9
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.6e-27 128.3 392 28.6
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 2.1e-27 127.9 396 28.3
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 3.6e-27 127.1 290 32.4
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 8.0e-27 125.9 466 27.7
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 1.4e-26 125.2 436 29.1
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.4e-26 125.2 396 27.8
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.8e-26 124.8 276 32.6
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 5.2e-26 123.2 441 27.0
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 6.8e-26 122.9 392 30.1
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 2.0e-25 121.3 402 30.1
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 7.5e-25 119.4 285 33.0
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 1.7e-24 118.2 399 28.3
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 2.8e-24 117.5 445 27.6
Dinv09537 Davidia involucrata HOM05D006380 ORTHO05D008400 3.7e-24 117.1 367 28.6
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 6.3e-24 116.3 372 29.6
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 6.3e-24 116.3 367 29.4
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 2.4e-23 114.4 313 31.6
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 2.7e-22 110.9 371 28.3
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 5.9e-22 109.8 371 28.3
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 1.0e-21 109.0 235 32.3
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 2.9e-21 107.5 252 34.5
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 3.8e-21 107.1 344 28.8
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 6.6e-21 106.3 371 28.0
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 8.6e-21 105.9 377 29.2
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 1.1e-20 105.5 253 31.6
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 1.9e-20 104.8 443 26.4
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 2.5e-20 104.4 296 32.4
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 4.2e-20 103.6 429 24.0
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 5.5e-20 103.2 251 30.7
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 5.5e-20 103.2 212 33.5
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 7.2e-20 102.8 371 27.8
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 1.6e-19 101.7 369 27.4
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 2.1e-19 101.3 263 31.2
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 3.6e-19 100.5 446 27.6
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 8.0e-19 99.4 372 27.4
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 8.0e-19 99.4 238 31.5
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 2.3e-18 97.8 258 29.1
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 2.3e-18 97.8 226 31.4
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 6.8e-18 96.3 248 32.7
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.3e-16 92.0 243 31.7
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 1.7e-16 91.7 233 30.9
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 2.8e-16 90.9 252 29.0
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 2.8e-16 90.9 370 25.1
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 2.8e-16 90.9 431 25.1
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 4.9e-16 90.1 294 29.3
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 8.3e-16 89.4 400 25.5
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 2.4e-15 87.8 236 29.2
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 3.1e-15 87.4 256 28.5
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 7.0e-15 86.3 276 27.9
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 5.9e-14 83.2 519 23.3
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 7.8e-14 82.8 230 30.9
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 8.6e-13 79.3 295 27.5
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 1.5e-12 78.6 244 25.8
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 9.5e-12 75.9 296 26.0
PSO017G7033 Papaver somniferum HOM05D003497 ORTHO05D003964 1.2e-11 75.5 244 25.4
CiPaw.08G128300 Carya illinoinensis HOM05D000212 ORTHO05D003964 6.1e-11 73.2 115 45.2
Actinidia04396 Actinidia chinensis HOM05D003497 ORTHO05D003964 8.0e-11 72.8 196 29.1
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 1.4e-10 72.0 84 42.9
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 1.4e-10 72.0 144 31.9
Haze_10290 Corylus avellana HOM05D003497 ORTHO05D003964 3.1e-10 70.9 214 28.5
PSO017G1120 Papaver somniferum HOM05D003497 ORTHO05D003964 3.1e-10 70.9 220 30.0
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 6.8e-10 69.7 185 29.2
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 8.9e-10 69.3 163 30.1
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 2.0e-09 68.2 207 26.6
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 3.4e-09 67.4 128 30.5
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 3.4e-09 67.4 282 25.2
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 5.8e-09 66.6 207 26.6
PGR102G1148 Punica granatum HOM05D003497 ORTHO05D003964 9.8e-09 65.9 235 26.8
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 1.7e-08 65.1 239 27.2
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 2.9e-08 64.3 280 23.2
Haze_10296 Corylus avellana HOM05D003497 ORTHO05D003964 1.4e-07 62.0 76 42.1
MD10G1175800 Malus domestica HOM05D003497 ORTHO05D003964 1.4e-07 62.0 147 31.3
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 3.2e-07 60.8 133 30.1
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 5.4e-07 60.1 292 23.6
Lsat_1_v5_gn_5_117240 Lactuca sativa HOM05D003497 ORTHO05D003964 1.2e-06 58.9 51 51.0
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 2.0e-06 58.2 181 27.6
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 3.5e-06 57.4 122 31.1


User provided reference genes

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