Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 3.2e-256 887.9 440 100.0
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 9.8e-237 823.2 441 92.3
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 1.4e-235 819.3 435 93.3
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 1.3e-233 812.8 441 91.6
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 1.5e-197 693.0 441 76.4
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 4.6e-194 681.4 442 76.2
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 1.1e-192 676.8 441 74.6
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 2.8e-191 672.2 439 74.7
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 2.8e-191 672.2 437 74.4
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 5.3e-190 667.9 440 73.6
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 9.9e-189 663.7 440 73.4
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 1.7e-188 662.9 449 72.6
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.9e-188 662.1 437 72.1
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 3.8e-188 661.8 434 73.3
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 6.4e-188 661.0 434 71.9
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 8.4e-188 660.6 446 72.6
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 3.2e-187 658.7 446 72.0
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 1.6e-186 656.4 436 73.6
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 2.1e-186 656.0 438 72.8
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 2.1e-186 656.0 437 72.1
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 4.6e-186 654.8 433 73.9
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 4.6e-186 654.8 443 72.2
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 4.6e-186 654.8 440 73.0
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 7.8e-186 654.1 438 73.7
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 7.8e-186 654.1 440 72.5
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 3.0e-185 652.1 428 74.5
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 6.6e-185 651.0 439 71.1
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 6.6e-185 651.0 434 73.5
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 1.1e-184 650.2 434 73.0
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 1.3e-183 646.7 435 72.9
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 1.6e-183 646.4 431 73.1
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 1.1e-182 643.7 441 71.2
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 1.4e-182 643.3 442 71.3
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 3.1e-182 642.1 438 72.8
Gorai.010G152800 Gossypium raimondii HOM05D006332 ORTHO05D008421 4.0e-182 641.7 422 72.5
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 1.5e-181 639.8 447 70.2
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 2.0e-181 639.4 443 70.7
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 4.5e-181 638.3 438 72.1
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 5.8e-181 637.9 435 72.0
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 1.7e-180 636.3 431 71.0
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.7e-180 636.3 437 71.6
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 2.9e-180 635.6 438 72.4
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 3.8e-180 635.2 459 69.5
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 4.9e-180 634.8 438 71.0
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 2.4e-179 632.5 445 70.3
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 3.2e-179 632.1 428 71.7
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 7.1e-179 630.9 442 70.8
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 1.6e-178 629.8 437 70.3
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 7.9e-178 627.5 449 69.5
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 1.0e-177 627.1 446 69.7
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 1.8e-177 626.3 444 68.5
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.5e-176 623.2 437 68.6
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 1.3e-175 620.2 444 68.0
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 1.6e-175 619.8 441 67.1
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 1.6e-175 619.8 440 70.0
Gorai.011G026200 Gossypium raimondii HOM05D006332 ORTHO05D008421 6.2e-175 617.8 435 68.5
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 6.2e-175 617.8 442 68.8
Oeu053924.1 Olea europaea HOM05D006332 ORTHO05D008421 2.4e-174 615.9 436 70.0
Gohir.D10G024900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 3.1e-174 615.5 430 68.8
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 1.5e-173 613.2 437 70.5
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 1.3e-172 610.1 444 68.5
TWI63G1670 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 1.7e-172 609.8 457 67.4
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 1.1e-171 607.1 448 67.0
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 5.5e-171 604.7 440 68.6
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 5.5e-171 604.7 444 66.0
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 4.8e-167 591.7 440 67.3
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 2.4e-166 589.3 432 66.0
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 9.0e-166 587.4 443 65.5
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 1.2e-165 587.0 441 66.0
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 2.0e-165 586.3 447 67.3
ATR0680G340 Amborella trichopoda HOM05D006332 ORTHO05D008421 3.4e-165 585.5 428 68.5
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 3.4e-165 585.5 439 66.7
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 3.4e-165 585.5 437 67.3
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 1.7e-164 583.2 445 66.7
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 4.9e-164 581.6 437 66.4
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 5.5e-163 578.2 431 67.1
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 9.3e-163 577.4 436 65.6
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 6.0e-162 574.7 423 67.1
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 6.0e-162 574.7 423 67.1
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 2.3e-161 572.8 423 66.9
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 2.3e-161 572.8 423 66.9
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 2.3e-161 572.8 434 66.8
CDE08G0172 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 1.5e-160 570.1 444 64.0
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 3.3e-160 568.9 499 59.9
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 1.1e-158 563.9 442 64.7
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 6.9e-158 561.2 450 65.1
ECA248G3961 Erigeron canadensis HOM05D006332 ORTHO05D008421 5.9e-157 558.1 433 62.8
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 2.9e-156 555.8 442 63.1
Nn1g04020 Nelumbo nucifera HOM05D006332 ORTHO05D008421 1.1e-155 553.9 368 71.7
Lsat_1_v5_gn_7_19001 Lactuca sativa HOM05D006332 ORTHO05D008421 4.3e-152 542.0 433 62.8
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 1.2e-149 533.9 441 62.4
CARHR143350 Cardamine hirsuta HOM05D006332 ORTHO05D008421 1.2e-149 533.9 386 68.9
Hma1.2p1_0126F.1_g059220 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 4.5e-149 531.9 442 60.4
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 5.9e-149 531.6 442 61.3
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 1.4e-147 526.9 436 63.1
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 2.1e-146 523.1 342 73.4
Hma1.2p1_0881F.1_g231960 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.8e-145 520.0 345 73.9
SGA_v2.0_scaffold49G18281 Striga asiatica HOM05D006332 ORTHO05D008421 1.7e-143 513.5 444 59.9
DCAR_004087 Daucus carota HOM05D006332 ORTHO05D008421 3.7e-143 512.3 347 71.5
Lsat_1_v5_gn_1_127821 Lactuca sativa HOM05D006332 ORTHO05D008421 7.2e-139 498.0 440 58.2
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 4.1e-134 482.3 437 58.1
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 2.7e-130 469.5 360 65.3
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.2e-128 464.2 360 66.4
Mapoly0122s0006 Marchantia polymorpha HOM05D006332 ORTHO05D008421 1.3e-127 460.7 442 52.5
unitig_8.g3355 Utricularia gibba HOM05D006332 ORTHO05D008421 1.7e-127 460.3 447 54.8
AagrBONN_evm.TU.Sc2ySwM_344.1820 Anthoceros agrestis HOM05D006332 ORTHO05D008421 2.7e-125 453.0 433 52.9
Pp3c1_28670 Physcomitrium patens HOM05D006332 ORTHO05D008421 6.1e-122 441.8 442 52.0
Sc24g0000810 Simmondsia chinensis HOM05D006332 ORTHO05D008421 8.0e-122 441.4 609 43.2
SMO364G0571 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 2.0e-120 436.8 421 52.5
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 4.4e-120 435.6 321 66.0
Atru.chr10.1934 Acer truncatum HOM05D006332 ORTHO05D008421 2.8e-119 433.0 296 71.6
CBR_g24248 Chara braunii HOM05D006332 ORTHO05D008421 3.1e-89 333.2 453 42.8
SMO364G0067 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 4.4e-88 329.3 314 52.2
Gohir.A10G024325 Gossypium hirsutum HOM05D006332 ORTHO05D008421 4.1e-86 322.8 203 77.8
SHI01800 Sapria himalayana HOM05D006332 ORTHO05D008421 1.4e-81 307.8 290 57.9
Nitab4.5_0009738g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.3e-74 284.6 328 48.2
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 9.0e-73 278.5 216 62.0
Gohir.A10G024350 Gossypium hirsutum HOM05D006332 ORTHO05D008421 3.4e-48 196.8 162 58.0
PRCOL_00003805 Prasinoderma coloniale HOM05D006332 ORTHO05D008421 1.4e-46 191.4 486 30.7
Atru.chr10.1933 Acer truncatum HOM05D006332 ORTHO05D008421 6.3e-34 149.4 120 58.3
SHI01798 Sapria himalayana HOM05D000002 ORTHO05D000001 8.2e-34 149.1 199 41.7
Ciclev10009862m.g Citrus clementina HOM05D006332 ORTHO05D008421 4.5e-32 143.3 102 63.7
PSO017G7020 Papaver somniferum HOM05D006332 ORTHO05D000676 3.1e-17 94.0 114 37.7
Nitab4.5_0009738g0030 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.2e-16 92.0 91 54.9
TPR.G24681 Trifolium pratense HOM05D006332 ORTHO05D001923 2.7e-16 90.9 62 61.3
PSO170G5489 Papaver somniferum HOM05D006332 ORTHO05D008421 5.9e-16 89.7 100 41.0
CDE02G4141 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 5.2e-12 76.6 123 38.2
Os10g0498800 Oryza sativa ssp. japonica HOM05D006332 ORTHO05D008421 5.7e-11 73.2 66 51.5
Cfa022434 Carpinus fangiana HOM05D006332 ORTHO05D121602 6.3e-10 69.7 309 26.2
TPR.G32042 Trifolium pratense HOM05D006332 ORTHO05D034078 3.5e-08 63.9 41 75.6
FAN09G0423 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.0e-07 60.1 52 57.7
FAN09G2993 Fragaria x ananassa HOM05D006332 ORTHO05D210550 1.5e-06 58.5 50 58.0
Haze_21185 Corylus avellana HOM05D000405 ORTHO05D000712 5.5e-06 56.6 27 92.6


User provided reference genes

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