Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 2.4e-190 668.7 336 100.0
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 5.3e-166 587.8 356 85.1
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 8.2e-151 537.3 335 82.4
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 1.8e-137 493.0 347 77.2
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 1.8e-113 413.3 324 65.1
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 5.4e-110 401.7 324 63.3
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 5.5e-107 391.7 323 61.9
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 4.0e-105 385.6 316 63.3
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 5.2e-105 385.2 306 64.1
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 3.4e-104 382.5 308 61.0
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 2.2e-103 379.8 306 62.1
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 2.2e-103 379.8 308 60.7
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 6.3e-103 378.3 321 61.1
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 4.1e-102 375.6 315 63.2
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 2.7e-101 372.9 308 59.1
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 3.5e-101 372.5 324 60.2
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 4.5e-101 372.1 341 59.5
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 4.5e-101 372.1 294 61.9
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 5.9e-101 371.7 320 61.2
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.3e-100 370.5 324 60.2
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.7e-100 370.2 324 59.9
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.3e-100 369.8 324 60.2
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 2.3e-100 369.8 308 59.7
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 8.6e-100 367.9 324 60.2
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 1.9e-99 366.7 274 62.8
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.5e-99 366.3 324 59.3
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 2.5e-99 366.3 306 59.8
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 2.5e-99 366.3 306 59.8
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 3.3e-99 365.9 305 59.3
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 4.3e-99 365.5 310 60.0
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 1.0e-97 360.9 307 59.3
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 4.0e-97 359.0 309 58.9
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 8.9e-97 357.8 308 57.5
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 8.9e-97 357.8 273 61.9
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 4.4e-96 355.5 308 57.8
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 9.8e-96 354.4 313 59.1
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 1.3e-95 354.0 308 57.1
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 1.3e-95 354.0 308 58.1
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 1.7e-95 353.6 310 59.4
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 6.4e-95 351.7 276 62.0
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 1.4e-94 350.5 313 55.9
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 4.1e-94 349.0 309 55.7
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 5.4e-94 348.6 295 56.9
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 1.6e-93 347.1 315 57.1
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 3.5e-93 345.9 273 60.1
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 7.8e-93 344.7 308 55.2
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 3.9e-92 342.4 302 58.3
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 3.9e-92 342.4 308 56.5
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 5.0e-92 342.0 297 56.9
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 1.5e-91 340.5 308 58.8
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 1.5e-91 340.5 310 56.8
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 1.5e-91 340.5 308 56.5
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 1.5e-91 340.5 270 60.0
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 2.5e-91 339.7 310 56.5
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 3.3e-91 339.3 273 59.7
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 4.3e-91 339.0 297 54.5
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 7.3e-91 338.2 310 56.5
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 1.6e-90 337.0 279 60.2
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 3.6e-90 335.9 297 54.5
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 3.6e-90 335.9 330 53.3
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 4.7e-90 335.5 297 54.2
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 2.3e-89 333.2 305 56.4
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 3.1e-89 332.8 303 52.5
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 6.8e-89 331.6 297 56.2
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.5e-88 330.5 297 53.2
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 4.4e-88 328.9 307 55.4
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 1.3e-87 327.4 302 53.0
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 2.2e-87 326.6 270 56.7
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 4.9e-87 325.5 350 50.6
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 6.4e-87 325.1 275 56.7
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 2.4e-86 323.2 278 58.3
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 5.4e-86 322.0 298 53.7
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 3.0e-84 316.2 274 55.5
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 3.9e-84 315.8 263 58.9
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 6.6e-84 315.1 320 51.6
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 1.6e-82 310.5 309 52.1
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 1.1e-81 307.8 270 57.0
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 3.1e-81 306.2 273 53.1
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 8.9e-81 304.7 311 51.4
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 2.0e-80 303.5 242 59.5
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 2.6e-80 303.1 286 54.2
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 6.0e-77 292.0 284 52.5
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 6.0e-77 292.0 301 51.5
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 2.5e-75 286.6 306 48.7
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 3.3e-75 286.2 297 49.5
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 2.0e-72 276.9 338 45.6
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 7.6e-72 275.0 266 50.4
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.1e-70 271.2 293 48.1
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 2.4e-70 270.0 281 50.2
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 1.5e-67 260.8 234 53.8
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 4.3e-67 259.2 297 45.8
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 2.1e-66 256.9 239 54.8
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 8.1e-66 255.0 331 43.2
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 9.0e-65 251.5 212 58.5
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 2.6e-64 250.0 270 48.5
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 9.9e-64 248.1 328 42.4
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 3.0e-60 236.5 280 45.4
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 1.3e-58 231.1 216 53.2
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 2.8e-58 229.9 189 61.9
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 6.2e-58 228.8 190 60.0
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 8.1e-58 228.4 254 47.6
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 1.4e-54 217.6 190 58.9
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 2.3e-52 210.3 190 58.4
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 8.7e-52 208.4 344 38.1
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 1.5e-51 207.6 299 38.5
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 3.3e-51 206.5 179 57.0
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 2.8e-50 203.4 191 56.0
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 6.2e-50 202.2 345 38.3
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 1.5e-48 197.6 278 40.6
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 2.6e-48 196.8 260 40.8
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.3e-47 194.5 254 41.7
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 2.3e-44 183.7 280 39.3
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.9e-43 180.6 173 54.3
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 2.8e-42 176.8 190 50.0
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 3.7e-42 176.4 117 70.1
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 1.8e-41 174.1 274 38.3
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 3.8e-39 166.4 175 49.7
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 3.0e-36 156.8 171 48.5
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 8.7e-36 155.2 119 63.0
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 7.4e-35 152.1 310 31.0
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 9.7e-35 151.8 119 60.5
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 8.2e-34 148.7 392 28.1
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 1.8e-33 147.5 212 39.6
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 2.4e-33 147.1 136 53.7
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 3.1e-33 146.7 104 64.4
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 6.9e-33 145.6 152 48.0
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 2.0e-32 144.1 129 59.7
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 7.2e-30 135.6 119 52.1
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 3.0e-28 130.2 252 33.7
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 3.9e-28 129.8 116 58.6
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 8.8e-28 128.6 127 52.0
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 2.4e-25 120.6 172 41.9
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 2.6e-24 117.1 195 37.9
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 2.9e-23 113.6 101 55.4
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 5.7e-19 99.4 106 49.1
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 3.1e-17 93.6 202 36.6
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 1.5e-16 91.3 64 65.6
unitig_747.g21341 Utricularia gibba HOM05D000590 ORTHO05D006825 3.2e-14 83.6 61 62.3
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 1.4e-12 78.2 65 60.0
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 2.3e-12 77.4 57 57.9
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 2.6e-11 73.9 113 34.5
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 8.2e-10 68.9 72 48.6
PSO210G5020 Papaver somniferum HOM05D001459 ORTHO05D003498 1.3e-07 61.6 52 51.9
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 7.2e-06 55.8 53 56.6
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 9.4e-06 55.5 83 36.1
MD07G1149100 Malus domestica HOM05D000590 ORTHO05D006825 9.4e-06 55.5 43 53.5


User provided reference genes

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