Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.4e-268 929.1 484 100.0
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 7.5e-230 800.4 485 86.0
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 1.7e-226 789.3 485 84.9
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 2.3e-191 672.5 588 65.0
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 7.8e-187 657.5 484 70.5
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 8.6e-186 654.1 484 69.6
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.1e-185 653.7 484 69.6
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 1.2e-182 643.7 485 68.9
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 7.6e-182 641.0 484 67.8
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 1.6e-179 633.3 485 68.5
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 3.0e-178 629.0 486 67.5
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 1.1e-177 627.1 493 66.5
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 3.6e-176 622.1 485 67.6
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 8.1e-176 620.9 485 67.6
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 2.0e-174 616.3 453 70.2
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 2.6e-174 615.9 490 66.5
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 5.8e-174 614.8 494 67.8
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 9.9e-174 614.0 491 65.6
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 1.7e-173 613.2 492 66.1
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 3.5e-171 605.5 461 68.3
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 5.1e-170 601.7 488 66.8
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.9e-169 599.7 506 65.4
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.6e-168 596.7 492 66.7
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 3.6e-168 595.5 484 63.4
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 4.8e-168 595.1 491 64.6
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 8.1e-168 594.3 485 65.2
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 5.8e-166 588.2 489 64.6
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.8e-165 585.5 490 63.5
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 6.4e-165 584.7 490 63.5
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 9.3e-164 580.9 485 64.9
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.5e-163 578.9 478 62.8
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 4.6e-163 578.6 484 62.0
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 4.6e-163 578.6 486 62.3
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.0e-162 577.4 497 62.6
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.9e-162 575.5 484 62.0
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 6.7e-162 574.7 491 62.9
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 1.1e-161 573.9 488 62.9
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 1.5e-161 573.5 485 63.7
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.9e-161 573.2 471 63.1
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.5e-161 572.8 485 63.3
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 4.3e-161 572.0 486 62.8
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 9.6e-161 570.9 497 62.2
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 9.6e-161 570.9 452 67.0
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.1e-160 569.7 486 62.8
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.8e-160 569.3 489 60.3
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.1e-159 567.4 489 61.1
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.1e-159 567.4 503 62.8
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 1.4e-159 567.0 501 61.3
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 1.8e-159 566.6 503 63.2
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 3.1e-159 565.8 485 60.6
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 5.3e-159 565.1 484 61.8
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 6.9e-159 564.7 491 61.3
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.0e-159 564.3 516 60.3
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-158 563.9 508 59.4
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 2.0e-158 563.1 485 60.2
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 7.6e-158 561.2 498 61.8
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 1.4e-156 557.0 485 60.8
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 9.3e-156 554.3 485 60.2
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 2.1e-155 553.1 490 60.0
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 4.6e-155 552.0 435 66.4
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.0e-155 551.6 463 62.2
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.8e-154 550.1 492 62.0
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 3.0e-154 549.3 493 61.5
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 6.7e-154 548.1 484 58.7
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 1.1e-153 547.4 497 60.6
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 1.1e-153 547.4 484 59.5
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 1.9e-153 546.6 511 61.1
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 4.3e-153 545.4 490 59.4
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 2.8e-152 542.7 492 60.8
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 4.8e-152 542.0 486 59.5
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 4.8e-152 542.0 446 64.1
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 8.2e-152 541.2 492 60.0
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 4.0e-151 538.9 464 63.4
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.0e-151 538.9 490 61.0
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 1.0e-149 534.3 484 58.1
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 1.6e-147 526.9 433 62.6
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 3.5e-147 525.8 443 63.4
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 1.0e-146 524.2 484 57.2
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 1.8e-146 523.5 544 55.9
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 2.3e-146 523.1 491 57.0
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 9.7e-145 517.7 405 66.7
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 2.2e-144 516.5 486 57.4
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 3.7e-144 515.8 441 61.7
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 1.1e-143 514.2 485 57.7
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.4e-143 513.1 495 58.4
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 5.3e-143 511.9 430 65.1
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 9.0e-143 511.1 493 55.8
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.2e-142 510.8 486 56.6
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 3.4e-142 509.2 491 55.8
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 7.6e-142 508.1 493 58.4
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 6.5e-141 505.0 487 56.3
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 1.4e-140 503.8 485 56.5
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 5.5e-140 501.9 507 56.0
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 2.7e-139 499.6 517 53.8
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 7.9e-139 498.0 477 57.0
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 7.9e-139 498.0 485 56.3
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.8e-138 496.9 486 55.1
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 2.3e-138 496.5 488 56.8
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 2.3e-138 496.5 484 56.0
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 3.0e-138 496.1 458 59.0
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 1.9e-137 493.4 485 56.7
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 4.3e-137 492.3 486 55.8
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 4.3e-137 492.3 484 56.8
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 7.4e-137 491.5 489 56.4
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 9.7e-137 491.1 487 55.9
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 9.7e-137 491.1 488 56.1
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.7e-137 491.1 533 54.2
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 1.3e-136 490.7 492 54.5
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.3e-136 490.7 533 54.2
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 6.3e-136 488.4 490 55.7
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 1.8e-135 486.9 509 54.0
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.9e-132 476.9 453 60.5
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 2.7e-131 473.0 488 54.5
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 3.6e-131 472.6 457 56.7
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 4.7e-131 472.2 487 54.4
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 1.0e-130 471.1 471 55.4
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 5.7e-129 465.3 492 53.3
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 1.7e-128 463.8 484 52.3
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 2.2e-128 463.4 484 52.9
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 4.8e-128 462.2 488 52.9
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 8.5e-125 451.4 401 57.1
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 1.1e-124 451.1 486 53.5
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 5.5e-124 448.7 460 54.1
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.6e-123 447.2 457 56.2
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 1.4e-122 444.1 451 55.0
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 3.7e-120 436.0 498 53.2
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.0e-118 430.3 390 58.2
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 1.5e-116 424.1 446 52.7
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 3.2e-116 422.9 485 49.9
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.1e-111 407.9 216 91.2
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.1e-111 406.0 449 54.3
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 2.4e-103 380.2 487 46.6
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 7.7e-102 375.2 395 56.2
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.3e-101 373.6 488 49.6
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 1.4e-98 364.4 482 48.8
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 9.8e-97 358.2 216 80.6
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 4.1e-95 352.8 411 51.8
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 8.6e-93 345.1 415 49.4
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 4.4e-89 332.8 446 44.4
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 6.0e-86 322.4 450 40.2
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 6.0e-86 322.4 372 47.3
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 5.0e-85 319.3 347 53.3
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 8.9e-82 308.5 222 66.7
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 3.7e-80 303.1 371 44.5
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 2.1e-78 297.4 366 46.7
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 6.6e-77 292.4 294 50.0
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 4.7e-67 259.6 174 70.7
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.1e-52 211.8 156 68.6
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 7.3e-52 209.1 134 72.4
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 1.3e-45 188.3 313 42.8
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 8.1e-43 179.1 291 35.7
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 1.1e-42 178.7 237 46.4
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 1.4e-42 178.3 269 43.1
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 5.8e-33 146.4 244 32.4
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 4.9e-32 143.3 95 68.4
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 8.4e-32 142.5 190 37.4
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 3.9e-29 133.7 229 41.5
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 3.4e-25 120.6 76 71.1
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 5.0e-24 116.7 124 59.7
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 4.2e-23 113.6 70 71.4
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 5.3e-18 96.7 114 50.0
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 1.0e-16 92.4 314 25.8
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 5.5e-15 86.7 52 73.1
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 5.5e-15 86.7 93 50.5
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 1.8e-10 71.6 43 76.7
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 4.5e-09 67.0 74 48.6
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 3.8e-08 63.9 42 61.9
FvH4_4g16331 Fragaria vesca HOM05D004208 ORTHO05D197324 1.1e-07 62.4 67 55.2


User provided reference genes

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