Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 0.0e+00 1115.5 570 100.0
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 4.5e-250 867.8 567 79.9
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 3.2e-216 755.4 592 70.8
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 2.8e-183 646.0 484 73.8
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 2.9e-140 503.1 585 52.1
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 2.3e-129 466.8 594 48.8
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 1.1e-128 464.5 595 48.9
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 4.3e-128 462.6 583 48.9
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 1.1e-126 458.0 585 49.6
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 9.1e-126 454.9 545 50.5
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 9.1e-126 454.9 693 44.4
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 4.5e-125 452.6 580 47.6
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 5.9e-125 452.2 563 49.9
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 5.9e-125 452.2 578 47.6
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 1.4e-123 447.6 594 47.6
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.9e-123 447.2 591 48.4
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 4.2e-123 446.0 558 49.6
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 7.2e-123 445.3 594 47.5
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 3.6e-122 443.0 599 47.2
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.0e-121 441.4 566 47.7
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 5.1e-121 439.1 582 46.9
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 2.0e-120 437.2 584 46.7
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 7.4e-120 435.3 578 48.1
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 2.8e-119 433.3 575 46.3
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 6.9e-118 428.7 589 46.3
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 3.4e-117 426.4 583 45.8
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 1.0e-116 424.9 587 46.2
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 1.0e-116 424.9 596 44.8
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 2.5e-115 420.2 581 46.0
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 7.2e-115 418.7 586 46.4
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 1.2e-114 417.9 614 45.4
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 1.6e-114 417.5 558 46.4
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 2.7e-114 416.8 595 44.7
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 1.8e-113 414.1 583 46.1
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 1.5e-112 411.0 575 45.4
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 2.6e-112 410.2 588 45.7
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 4.4e-112 409.5 603 44.4
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 1.7e-111 407.5 595 44.4
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 2.2e-111 407.1 575 44.3
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 4.8e-111 406.0 574 45.6
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 8.2e-111 405.2 594 44.1
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 1.1e-110 404.8 589 44.7
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 3.1e-110 403.3 587 44.5
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 5.3e-110 402.5 590 45.1
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.6e-109 401.0 592 44.9
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 4.5e-109 399.4 575 44.7
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 5.9e-109 399.1 578 45.3
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 7.7e-109 398.7 592 44.3
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 1.3e-108 397.9 578 45.2
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 1.3e-108 397.9 570 43.9
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 3.8e-108 396.4 570 44.2
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 3.8e-108 396.4 600 42.2
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 1.6e-106 391.0 575 44.5
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 3.6e-106 389.8 578 43.9
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 3.6e-106 389.8 580 44.5
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 8.0e-106 388.7 592 44.3
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 5.3e-102 375.9 519 45.3
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 2.9e-100 370.2 604 41.9
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.9e-100 370.2 604 41.9
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 2.9e-100 370.2 603 42.6
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.8e-100 369.8 604 41.9
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.8e-100 369.8 605 41.8
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 5.5e-99 365.9 572 43.5
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 2.1e-98 364.0 572 41.4
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 2.1e-98 364.0 514 44.0
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 8.0e-98 362.1 510 44.5
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 6.8e-97 359.0 508 44.1
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 2.0e-96 357.5 570 42.3
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 7.7e-93 345.5 590 42.0
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 1.7e-92 344.4 641 40.6
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 9.5e-91 338.6 543 41.8
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 4.0e-89 333.2 568 40.7
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 4.0e-89 333.2 621 38.5
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 1.5e-88 331.3 582 39.7
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 1.5e-88 331.3 570 39.8
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 2.0e-88 330.9 551 41.4
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 1.3e-87 328.2 283 60.8
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.3e-87 328.2 577 39.7
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.3e-87 328.2 605 39.5
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 2.2e-87 327.4 567 39.7
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 2.2e-87 327.4 569 38.7
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 6.3e-87 325.9 571 39.9
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 1.4e-86 324.7 574 39.7
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 1.4e-86 324.7 572 39.3
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 5.4e-86 322.8 501 42.5
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 9.2e-86 322.0 596 39.8
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 9.2e-86 322.0 534 41.6
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 5.9e-85 319.3 569 39.4
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 1.7e-84 317.8 569 39.4
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 5.0e-84 316.2 571 39.4
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 5.0e-84 316.2 445 45.6
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 1.5e-83 314.7 562 39.0
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 4.3e-83 313.2 610 37.9
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 5.6e-83 312.8 585 38.1
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 3.6e-82 310.1 568 38.4
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 6.1e-82 309.3 590 36.4
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.7e-79 301.2 602 40.0
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 3.7e-79 300.1 568 37.1
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.4e-78 297.4 543 39.4
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 4.1e-78 296.6 571 37.8
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 4.1e-78 296.6 571 37.8
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 4.1e-78 296.6 571 37.8
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 7.0e-78 295.8 506 40.1
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 4.3e-75 286.6 563 37.1
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 3.6e-74 283.5 333 48.9
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 6.2e-74 282.7 296 54.1
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 1.4e-73 281.6 564 36.5
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 1.4e-73 281.6 596 35.9
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 2.4e-70 270.8 599 34.1
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 3.5e-69 266.9 460 40.2
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 1.7e-68 264.6 571 35.4
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 3.1e-65 253.8 223 58.7
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 3.4e-64 250.4 266 52.6
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.9e-64 248.8 266 52.3
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.9e-63 246.5 500 38.4
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.9e-63 246.5 274 50.7
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.1e-62 245.4 503 36.2
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 1.4e-62 245.0 273 50.9
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.0e-60 237.3 266 51.9
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 3.9e-60 236.9 434 41.5
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 2.9e-55 220.7 625 30.4
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 5.4e-54 216.5 498 34.7
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 1.5e-51 208.4 453 35.8
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 3.3e-51 207.2 347 40.1
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 1.8e-49 201.4 287 40.4
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 4.9e-47 193.4 285 44.2
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.2e-46 190.7 421 36.6
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 5.4e-46 189.9 475 34.5
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.8e-41 174.9 275 43.6
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 4.0e-33 147.1 123 56.9
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 2.6e-32 144.4 160 46.2
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 4.5e-32 143.7 125 56.0
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 1.3e-31 142.1 327 35.8
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 1.7e-31 141.7 107 64.5
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 9.3e-30 136.0 314 31.5
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 3.1e-25 120.9 152 48.7
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 2.0e-24 118.2 411 28.7
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.0e-23 115.9 122 52.5
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.3e-23 115.5 396 30.3
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 2.9e-23 114.4 355 32.4
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 9.3e-22 109.4 130 46.2
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 8.7e-20 102.8 120 42.5
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 3.3e-19 100.9 137 46.0
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 1.8e-17 95.1 294 25.5
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 9.0e-17 92.8 101 48.5
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 4.5e-16 90.5 159 32.1
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.9e-11 75.1 123 40.7


User provided reference genes

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