Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 1.1e-150 536.6 270 100.0
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 4.0e-100 368.6 224 79.0
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 1.2e-99 367.1 295 66.4
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 1.2e-96 357.1 256 71.9
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 6.7e-87 324.7 272 64.7
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 3.1e-84 315.8 277 61.7
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 3.1e-84 315.8 275 61.8
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 9.0e-84 314.3 268 63.4
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 1.2e-83 313.9 295 61.4
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 1.2e-83 313.9 269 62.1
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 2.6e-83 312.8 265 61.9
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 3.4e-83 312.4 207 74.4
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 7.7e-83 311.2 279 59.5
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 1.3e-82 310.5 289 60.6
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 6.5e-82 308.1 272 59.2
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 2.5e-81 306.2 264 62.1
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 2.5e-81 306.2 211 69.2
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 4.2e-81 305.4 288 57.6
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 9.4e-81 304.3 268 60.1
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 2.1e-80 303.1 274 59.1
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 3.6e-80 302.4 269 60.2
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 4.6e-80 302.0 269 62.1
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 6.1e-80 301.6 301 54.8
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 1.4e-79 300.4 281 58.0
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 2.3e-79 299.7 283 59.4
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 3.0e-79 299.3 266 60.2
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 3.9e-79 298.9 289 56.1
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 5.1e-79 298.5 258 60.9
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 5.1e-79 298.5 278 59.4
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 6.7e-79 298.1 272 58.1
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 1.1e-78 297.4 269 59.1
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 1.5e-78 297.0 269 60.6
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 1.5e-78 297.0 261 61.3
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 2.0e-78 296.6 291 57.4
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 2.5e-78 296.2 297 53.9
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 4.3e-78 295.4 276 59.4
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 7.4e-78 294.7 267 59.9
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 7.4e-78 294.7 269 58.4
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 9.7e-78 294.3 290 56.2
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 9.7e-78 294.3 267 60.3
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.3e-77 293.9 204 71.1
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 1.3e-77 293.9 280 58.2
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 1.3e-77 293.9 292 55.5
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 2.2e-77 293.1 278 57.9
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 2.2e-77 293.1 260 61.2
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 2.8e-77 292.7 221 64.3
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 3.7e-77 292.4 280 58.2
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 4.8e-77 292.0 292 56.2
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 6.3e-77 291.6 215 68.8
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 8.2e-77 291.2 206 68.9
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 8.2e-77 291.2 277 58.8
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 8.2e-77 291.2 279 57.7
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.1e-76 290.8 277 58.8
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 1.8e-76 290.0 291 56.7
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 1.8e-76 290.0 216 66.7
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 1.8e-76 290.0 286 57.3
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.4e-76 289.7 269 59.9
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 3.1e-76 289.3 216 67.1
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 4.1e-76 288.9 252 59.5
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 4.1e-76 288.9 293 56.3
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 9.1e-76 287.7 272 57.4
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.5e-75 287.0 262 59.2
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 2.0e-75 286.6 213 66.7
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 2.6e-75 286.2 270 57.8
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 2.6e-75 286.2 258 58.5
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 3.4e-75 285.8 272 57.0
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 7.7e-75 284.6 274 59.5
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 1.7e-74 283.5 272 58.1
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 2.2e-74 283.1 267 57.3
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 3.8e-74 282.3 266 57.5
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 5.0e-74 282.0 268 56.3
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 5.0e-74 282.0 314 51.9
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 8.5e-74 281.2 205 65.9
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 1.1e-73 280.8 266 58.6
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 1.9e-73 280.0 285 57.2
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 2.5e-73 279.6 267 56.9
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.6e-72 276.9 266 58.6
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 2.1e-72 276.6 274 58.0
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 2.1e-72 276.6 211 65.4
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 2.7e-72 276.2 214 64.0
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 3.6e-72 275.8 265 57.7
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 4.7e-72 275.4 221 63.3
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 4.7e-72 275.4 287 54.7
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 6.1e-72 275.0 279 55.2
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 1.0e-71 274.2 277 55.2
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.4e-71 273.9 271 57.2
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 3.0e-71 272.7 273 55.7
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 3.9e-71 272.3 281 55.2
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 8.8e-71 271.2 273 54.9
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 3.3e-70 269.2 274 53.3
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 7.4e-70 268.1 292 53.1
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 1.7e-69 266.9 261 54.4
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 2.2e-69 266.5 276 54.0
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 2.2e-69 266.5 276 54.0
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 2.8e-69 266.2 206 63.1
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 2.8e-69 266.2 206 63.1
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 4.8e-69 265.4 275 53.1
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 1.1e-68 264.2 226 60.2
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 1.8e-68 263.5 272 54.0
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 5.3e-68 261.9 292 50.3
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 7.0e-68 261.5 269 53.9
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 9.1e-68 261.2 263 55.5
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 9.1e-68 261.2 263 55.5
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 9.1e-68 261.2 282 53.9
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 1.2e-67 260.8 276 53.3
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 2.6e-67 259.6 214 62.6
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 3.8e-66 255.8 258 54.3
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 2.5e-57 226.5 199 57.8
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 3.2e-57 226.1 200 58.5
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 3.6e-56 222.6 210 59.5
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 1.3e-53 214.2 210 55.2
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 2.2e-53 213.4 199 52.8
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 8.3e-53 211.5 214 53.7
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 3.1e-52 209.5 211 56.4
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 2.0e-46 190.3 165 58.8
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 9.5e-41 171.4 205 43.4
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 5.2e-39 165.6 173 53.2
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 1.2e-38 164.5 216 42.1
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 1.5e-38 164.1 229 46.3
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 1.5e-38 164.1 241 41.5
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 1.2e-35 154.5 206 46.1
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 2.0e-35 153.7 213 41.3
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 3.5e-35 152.9 135 58.5
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 3.9e-34 149.4 213 44.1
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.6e-30 136.7 114 62.3
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 3.5e-27 126.3 121 57.0
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 9.8e-22 108.2 133 42.9
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 2.1e-19 100.5 75 65.3
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 9.5e-17 91.7 145 40.7
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 1.2e-16 91.3 203 34.5
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 2.8e-16 90.1 51 72.5
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 1.1e-15 88.2 78 55.1
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.7e-13 79.7 102 38.2
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.0e-10 71.6 74 47.3


User provided reference genes

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