Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 2.2e-147 525.8 303 100.0
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 2.3e-99 366.3 350 63.7
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 5.5e-98 361.7 308 67.5
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 1.0e-96 357.5 411 56.2
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 3.7e-70 269.2 353 52.4
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 3.8e-46 189.5 320 42.8
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 2.4e-45 186.8 181 58.0
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 3.2e-45 186.4 344 42.4
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 4.2e-45 186.0 331 41.7
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.2e-44 184.5 182 56.6
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 1.3e-43 181.0 195 56.4
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 1.8e-43 180.6 155 60.6
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.8e-43 180.6 155 60.6
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.8e-43 180.6 155 60.6
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 3.9e-43 179.5 190 59.5
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.9e-43 179.5 155 60.6
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 6.7e-43 178.7 166 60.8
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 1.1e-42 177.9 296 44.3
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 4.3e-42 176.0 318 43.7
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 5.6e-42 175.6 324 41.7
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 9.6e-42 174.9 168 61.9
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 1.6e-41 174.1 167 61.1
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 4.8e-41 172.6 159 58.5
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 1.4e-40 171.0 182 55.5
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 1.8e-40 170.6 166 56.0
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 3.1e-40 169.9 175 57.7
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 1.5e-39 167.5 178 56.7
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 2.0e-39 167.2 336 40.5
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 2.0e-39 167.2 170 57.6
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 2.6e-39 166.8 324 39.5
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 9.9e-39 164.9 319 42.0
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 9.9e-39 164.9 276 42.4
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 2.9e-38 163.3 173 57.8
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 2.9e-38 163.3 327 41.6
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 3.8e-38 162.9 324 36.7
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 4.9e-38 162.5 289 42.6
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 4.9e-38 162.5 289 42.6
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 4.9e-38 162.5 276 42.0
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 8.4e-38 161.8 295 42.4
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 2.4e-37 160.2 175 56.0
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 2.4e-37 160.2 197 53.3
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 3.2e-37 159.8 180 52.2
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 3.2e-37 159.8 291 42.3
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 5.5e-37 159.1 292 42.1
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 2.1e-36 157.1 316 41.1
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 3.5e-36 156.4 168 57.7
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 4.6e-36 156.0 352 38.4
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 6.0e-36 155.6 157 57.3
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 6.0e-36 155.6 314 39.5
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 1.0e-35 154.8 181 53.0
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 1.3e-35 154.5 168 56.5
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 2.3e-35 153.7 175 55.4
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 3.9e-35 152.9 269 42.0
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 3.9e-35 152.9 165 58.8
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 3.9e-35 152.9 294 43.9
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 5.1e-35 152.5 188 49.5
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 8.7e-35 151.8 160 56.9
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 9.6e-34 148.3 301 39.2
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 3.7e-33 146.4 204 46.1
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 3.7e-33 146.4 173 50.9
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 4.8e-33 146.0 326 37.4
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 6.2e-33 145.6 173 49.1
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 8.2e-33 145.2 179 50.3
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 1.1e-32 144.8 299 37.1
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.1e-32 144.8 296 38.2
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 3.1e-32 143.3 294 37.4
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 3.1e-32 143.3 336 38.4
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 4.0e-32 142.9 171 49.7
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 1.2e-31 141.4 182 46.7
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 2.0e-31 140.6 191 44.5
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 3.4e-31 139.8 171 51.5
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 5.8e-31 139.0 297 39.4
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 5.8e-31 139.0 154 50.6
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 7.6e-31 138.7 293 39.6
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 7.6e-31 138.7 309 39.5
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 7.6e-31 138.7 340 37.9
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.0e-30 138.3 298 37.2
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 1.0e-30 138.3 293 38.9
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 1.0e-30 138.3 167 51.5
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 1.7e-30 137.5 168 50.0
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 4.9e-30 136.0 172 53.5
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 4.2e-29 132.9 159 49.7
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 4.2e-29 132.9 153 51.6
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 7.1e-29 132.1 221 41.2
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 1.6e-28 131.0 154 50.6
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 2.7e-28 130.2 298 35.9
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 3.5e-28 129.8 241 42.3
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 3.5e-28 129.8 240 40.0
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 4.6e-28 129.4 314 36.9
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 6.0e-28 129.0 296 39.2
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 7.9e-28 128.6 174 47.1
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 1.0e-27 128.3 173 45.7
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 1.3e-27 127.9 298 40.3
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 1.8e-27 127.5 175 45.7
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 8.7e-27 125.2 140 52.9
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.1e-26 124.8 146 50.7
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 1.9e-26 124.0 398 31.2
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 2.5e-26 123.6 159 47.8
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 4.3e-26 122.9 156 48.1
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 7.4e-26 122.1 173 45.7
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 1.3e-25 121.3 128 53.9
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 1.3e-25 121.3 192 41.1
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 1.6e-25 120.9 188 44.1
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 4.8e-25 119.4 163 47.2
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.4e-24 117.9 161 44.1
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 2.4e-24 117.1 167 46.1
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 5.3e-24 115.9 299 35.5
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 1.2e-23 114.8 157 47.8
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 2.6e-23 113.6 146 49.3
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 1.1e-21 108.2 125 49.6
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 5.5e-21 105.9 160 41.9
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.6e-20 104.4 242 37.6
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 3.6e-20 103.2 156 42.3
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 6.1e-20 102.4 184 42.9
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 1.8e-19 100.9 270 33.3
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.5e-18 97.8 117 51.3
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 1.3e-17 94.7 287 31.7
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.2e-17 94.0 218 33.9
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 1.4e-16 91.3 170 38.8
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 4.1e-16 89.7 158 38.6
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 1.2e-15 88.2 145 42.1
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 5.9e-15 85.9 93 57.0
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 2.2e-14 84.0 148 41.9
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 3.8e-14 83.2 90 53.3
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 1.4e-13 81.3 191 35.1
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 4.2e-13 79.7 65 61.5
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 5.5e-13 79.3 274 28.8
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 1.6e-12 77.8 110 46.4
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 1.6e-12 77.8 148 39.9
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 1.1e-10 71.6 117 41.9
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 5.7e-10 69.3 210 32.4
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 3.7e-09 66.6 65 55.4
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 4.8e-09 66.2 92 45.7
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 4.8e-09 66.2 67 55.2
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 1.8e-08 64.3 98 37.8
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 1.5e-07 61.2 83 45.8
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 2.6e-07 60.5 114 36.8
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 7.7e-07 58.9 124 34.7
BcaB03g16455 Brassica carinata HOM05D004489 ORTHO05D005643 5.0e-06 56.2 86 40.7


User provided reference genes

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