Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 2.3e-79 298.9 158 100.0
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 2.7e-64 248.8 161 83.2
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.5e-62 243.0 152 80.3
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 5.7e-62 241.1 150 82.7
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 9.7e-62 240.4 199 69.8
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 9.7e-62 240.4 152 79.6
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.3e-61 240.0 152 78.9
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 1.7e-61 239.6 153 79.7
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 8.2e-61 237.3 158 79.1
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.8e-60 236.1 156 79.5
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.8e-60 236.1 159 76.7
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 2.4e-60 235.7 153 79.1
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 4.1e-60 235.0 156 77.6
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 4.1e-60 235.0 158 76.6
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 4.1e-60 235.0 153 78.4
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 5.3e-60 234.6 158 75.3
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 7.0e-60 234.2 158 77.8
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 9.1e-60 233.8 157 78.3
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 1.2e-59 233.4 152 79.6
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.6e-59 233.0 141 81.6
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 2.6e-59 232.3 158 77.2
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 3.5e-59 231.9 145 81.4
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 5.9e-59 231.1 141 82.3
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 7.7e-59 230.7 142 80.3
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 1.0e-58 230.3 142 81.0
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 1.0e-58 230.3 140 82.1
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.0e-58 230.3 158 75.9
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 1.3e-58 229.9 150 76.0
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.3e-58 229.9 158 75.9
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 1.7e-58 229.6 146 80.1
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 1.7e-58 229.6 138 82.6
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 2.2e-58 229.2 155 78.7
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 2.9e-58 228.8 140 81.4
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 2.9e-58 228.8 140 81.4
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 3.8e-58 228.4 151 76.2
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 8.5e-58 227.3 153 77.1
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 1.1e-57 226.9 138 81.9
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 1.5e-57 226.5 161 75.2
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.5e-57 225.7 158 74.7
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 2.5e-57 225.7 153 75.8
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 2.5e-57 225.7 153 75.8
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 3.2e-57 225.3 141 79.4
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.2e-57 225.3 141 79.4
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 3.2e-57 225.3 141 79.4
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 4.2e-57 224.9 158 74.1
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 5.5e-57 224.6 141 79.4
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 5.5e-57 224.6 150 76.7
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 9.4e-57 223.8 159 71.7
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.6e-56 223.0 158 73.4
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 1.6e-56 223.0 138 82.6
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 2.1e-56 222.6 153 73.2
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 3.6e-56 221.9 141 78.7
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 3.6e-56 221.9 141 78.0
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 6.1e-56 221.1 143 79.7
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.4e-55 219.9 157 73.2
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.4e-55 219.9 157 73.2
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 1.4e-55 219.9 157 73.2
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 1.4e-55 219.9 131 85.5
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 1.8e-55 219.5 141 77.3
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 1.8e-55 219.5 139 79.1
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 2.3e-55 219.2 141 76.6
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 2.3e-55 219.2 141 76.6
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 3.0e-55 218.8 139 77.7
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 4.0e-55 218.4 139 79.1
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 4.0e-55 218.4 158 72.2
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 5.2e-55 218.0 141 76.6
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 5.2e-55 218.0 154 73.4
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 5.2e-55 218.0 137 78.1
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 6.7e-55 217.6 141 75.9
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 6.7e-55 217.6 141 75.9
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 6.7e-55 217.6 141 75.9
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 1.1e-54 216.9 141 75.9
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 1.1e-54 216.9 142 76.8
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 1.5e-54 216.5 141 75.9
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 1.5e-54 216.5 141 75.9
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 2.6e-54 215.7 158 72.2
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 2.6e-54 215.7 137 77.4
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 3.3e-54 215.3 184 65.2
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 4.4e-54 214.9 141 77.3
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.7e-54 214.5 141 75.2
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.5e-54 214.2 141 75.2
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 1.7e-53 213.0 137 76.6
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.2e-53 212.6 141 74.5
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.8e-53 212.2 141 73.8
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 2.8e-53 212.2 158 70.9
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 2.8e-53 212.2 140 75.0
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.7e-53 211.8 141 73.8
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.8e-53 211.5 136 76.5
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 8.2e-53 210.7 143 76.2
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.4e-52 209.9 141 73.8
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 5.3e-52 208.0 141 74.5
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 5.3e-52 208.0 148 71.6
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 7.0e-52 207.6 158 69.6
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 9.1e-52 207.2 167 65.9
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 1.2e-51 206.8 158 69.6
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.2e-51 206.8 158 68.4
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 1.6e-51 206.5 141 73.8
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 1.6e-51 206.5 158 69.0
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 2.0e-51 206.1 225 54.7
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 3.5e-51 205.3 131 78.6
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 7.7e-51 204.1 142 74.6
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 7.7e-51 204.1 230 53.5
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 7.7e-51 204.1 158 67.1
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 1.0e-50 203.8 209 56.0
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.3e-50 203.4 124 83.1
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 1.7e-50 203.0 179 60.9
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 3.8e-50 201.8 127 81.1
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 6.5e-50 201.1 131 79.4
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 8.5e-50 200.7 134 79.1
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.5e-49 199.9 168 63.7
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 3.2e-49 198.7 138 76.8
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 3.2e-49 198.7 131 77.9
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.6e-48 196.4 141 71.6
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.7e-48 195.7 141 70.9
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 3.6e-48 195.3 245 49.8
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.0e-47 191.8 141 70.2
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 4.0e-47 191.8 116 81.9
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 5.7e-46 188.0 116 80.2
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 5.7e-46 188.0 145 70.3
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 9.8e-46 187.2 115 80.9
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 9.8e-46 187.2 115 80.9
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 2.2e-45 186.0 115 80.9
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 3.7e-45 185.3 142 69.0
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 3.7e-45 185.3 115 80.0
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-44 183.0 120 78.3
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 2.4e-44 182.6 115 79.1
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 4.1e-44 181.8 115 78.3
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 5.4e-44 181.4 115 78.3
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 9.1e-44 180.6 110 80.9
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 9.1e-44 180.6 110 80.9
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 3.5e-43 178.7 155 58.7
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.0e-42 177.2 114 77.2
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 1.7e-42 176.4 140 57.9
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 2.1e-40 169.5 154 55.2
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 6.1e-40 167.9 152 61.8
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 8.0e-40 167.5 133 60.2
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 1.0e-39 167.2 136 60.3
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 4.9e-37 158.3 102 81.4
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.1e-36 157.1 108 74.1
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 1.7e-34 149.8 87 87.4
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 4.0e-31 138.7 96 80.2
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 4.0e-31 138.7 200 44.0
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 1.8e-28 129.8 133 55.6
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 1.6e-27 126.7 143 42.7
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.7e-27 125.9 70 91.4
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 4.6e-27 125.2 82 68.3
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 3.9e-26 122.1 140 41.4
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 1.1e-25 120.6 70 91.4
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 2.8e-24 115.9 71 83.1
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 2.8e-24 115.9 71 83.1
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 6.2e-24 114.8 64 92.2
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-23 113.6 71 81.7
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 3.4e-22 109.0 77 64.9
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-20 104.0 65 83.1
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.0e-18 97.4 59 76.3
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.3e-18 97.1 59 76.3
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 3.6e-16 89.0 140 32.1
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 4.7e-16 88.6 135 32.6
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 6.2e-16 88.2 59 69.5
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.4e-14 82.4 64 70.3
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.2e-13 79.7 64 68.8
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 9.2e-12 74.3 47 70.2
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.2e-11 73.9 52 65.4
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.3e-10 70.5 49 73.5
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.3e-10 70.5 49 73.5
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 5.2e-07 58.5 59 57.6


User provided reference genes

Program Settings